| addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) | IBTK::HierarchyIntegrator | protectedvirtual |
| advanceHierarchy(double dt) | IBTK::HierarchyIntegrator | virtual |
| advanceLevel(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| AdvDiffHierarchyIntegrator(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart) | IBAMR::AdvDiffHierarchyIntegrator | protected |
| AdvDiffHierarchyIntegrator()=delete | IBAMR::AdvDiffHierarchyIntegrator | private |
| AdvDiffHierarchyIntegrator(const AdvDiffHierarchyIntegrator &from)=delete | IBAMR::AdvDiffHierarchyIntegrator | private |
| AdvDiffSemiImplicitHierarchyIntegrator(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| AdvDiffSemiImplicitHierarchyIntegrator()=delete | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | private |
| AdvDiffSemiImplicitHierarchyIntegrator(const AdvDiffSemiImplicitHierarchyIntegrator &from)=delete | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | private |
| allocatePatchData(int data_idx, double data_time, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
| applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy< NDIM >::applyGradientDetector(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int level_number, const double error_data_time, const int tag_index, const bool initial_time, const bool uses_richardson_extrapolation_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| ApplyGradientDetectorCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| applyGradientDetectorSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) | IBTK::HierarchyIntegrator | protectedvirtual |
| applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< DIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| atRegridPoint() const | IBTK::HierarchyIntegrator | |
| atRegridPointSpecialized() const | IBTK::HierarchyIntegrator | protectedvirtual |
| atRegridTimeStep() const | IBTK::HierarchyIntegrator | inlineprotected |
| buildHierarchyMathOps(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) | IBTK::HierarchyIntegrator | protected |
| CoarsenAlgorithmMap typedef | IBTK::HierarchyIntegrator | private |
| coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< DIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< DIM > > coarser_level, const double coarsen_data_time, const bool before_advance) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| CoarsenPatchStrategyMap typedef | IBTK::HierarchyIntegrator | private |
| CoarsenScheduleMap typedef | IBTK::HierarchyIntegrator | private |
| d_apply_gradient_detector_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_apply_gradient_detector_callbacks | IBTK::HierarchyIntegrator | protected |
| d_at_regrid_time_step | IBTK::HierarchyIntegrator | private |
| d_bdry_extrap_type | IBTK::HierarchyIntegrator | protected |
| d_cfl_max | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_child_integrators | IBTK::HierarchyIntegrator | protected |
| d_coarsen_algs | IBTK::HierarchyIntegrator | private |
| d_coarsen_scheds | IBTK::HierarchyIntegrator | private |
| d_coarsen_strategies | IBTK::HierarchyIntegrator | private |
| d_coarsest_reset_ln | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_copy_scratch_to_current_fast | IBTK::HierarchyIntegrator | protected |
| d_copy_scratch_to_current_slow | IBTK::HierarchyIntegrator | protected |
| d_current_context | IBTK::HierarchyIntegrator | protected |
| d_current_cycle_num | IBTK::HierarchyIntegrator | protected |
| d_current_data | IBTK::HierarchyIntegrator | protected |
| d_current_dt | IBTK::HierarchyIntegrator | protected |
| d_current_num_cycles | IBTK::HierarchyIntegrator | protected |
| d_default_convective_difference_form | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_default_convective_op_input_db | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_default_convective_op_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_default_convective_time_stepping_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_default_diffusion_time_stepping_type | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_default_init_convective_time_stepping_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_diffusion_coef_fcn | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_diffusion_coef_rhs_map | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_diffusion_coef_rhs_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_diffusion_coef_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_dt_growth_factor | IBTK::HierarchyIntegrator | protected |
| d_dt_init | IBTK::HierarchyIntegrator | protected |
| d_dt_max | IBTK::HierarchyIntegrator | protected |
| d_dt_min | IBTK::HierarchyIntegrator | protected |
| d_dt_previous | IBTK::HierarchyIntegrator | protected |
| d_enable_logging | IBTK::HierarchyIntegrator | protected |
| d_enable_logging_solver_iterations | IBTK::HierarchyIntegrator | protected |
| d_end_time | IBTK::HierarchyIntegrator | protected |
| d_F_fcn | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_F_output | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_F_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_fill_after_regrid_bc_idxs | IBTK::HierarchyIntegrator | protected |
| d_fill_after_regrid_phys_bdry_bc_op | IBTK::HierarchyIntegrator | protected |
| d_fill_after_regrid_prolong_alg | IBTK::HierarchyIntegrator | protected |
| d_finest_reset_ln | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_ghostfill_algs | IBTK::HierarchyIntegrator | private |
| d_ghostfill_scheds | IBTK::HierarchyIntegrator | private |
| d_ghostfill_strategies | IBTK::HierarchyIntegrator | private |
| d_gridding_alg | IBTK::HierarchyIntegrator | protected |
| d_helmholtz_precond_db | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_precond_type | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_rhs_ops | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_rhs_ops_need_init | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_solver_db | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_solver_type | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_solvers | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_solvers_need_init | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_sub_precond_db | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_helmholtz_sub_precond_type | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_hier_bdry_fill_ops | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_hier_cc_data_ops | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_hier_fc_data_ops | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_hier_math_ops | IBTK::HierarchyIntegrator | protected |
| d_hier_sc_data_ops | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_hierarchy | IBTK::HierarchyIntegrator | protected |
| d_hierarchy_is_initialized | IBTK::HierarchyIntegrator | protected |
| d_integrate_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_integrator_is_initialized | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_integrator_step | IBTK::HierarchyIntegrator | protected |
| d_integrator_time | IBTK::HierarchyIntegrator | protected |
| d_load_balancer | IBTK::HierarchyIntegrator | protected |
| d_manage_hier_math_ops | IBTK::HierarchyIntegrator | protected |
| d_max_integrator_steps | IBTK::HierarchyIntegrator | protected |
| d_may_need_to_reset_hierarchy_configuration | IBTK::HierarchyIntegrator | protected |
| d_N_old_var | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_N_var | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_new_context | IBTK::HierarchyIntegrator | protected |
| d_new_data | IBTK::HierarchyIntegrator | protected |
| d_no_fill_op | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_num_cycles | IBTK::HierarchyIntegrator | protected |
| d_object_name | IBTK::HierarchyIntegrator | protected |
| d_parent_integrator | IBTK::HierarchyIntegrator | protected |
| d_plot_context | IBTK::HierarchyIntegrator | protected |
| d_plot_data | IBTK::HierarchyIntegrator | protected |
| d_postprocess_integrate_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_postprocess_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_preprocess_integrate_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_preprocess_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_prolong_algs | IBTK::HierarchyIntegrator | private |
| d_prolong_scheds | IBTK::HierarchyIntegrator | private |
| d_prolong_strategies | IBTK::HierarchyIntegrator | private |
| d_Q_bc_coef | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_convective_op | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_convective_op_input_db | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_convective_op_needs_init | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_convective_op_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_convective_time_stepping_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_damping_coef | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_difference_form | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_diffusion_coef | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_diffusion_coef_variable | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_diffusion_time_stepping_type | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_F_map | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_init | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_init_convective_time_stepping_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_is_diffusion_coef_variable | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_N_map | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_N_old_map | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
| d_Q_output | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_Q_rhs_map | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_reset_fcns | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_reset_fcns_ctx | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_reset_priority | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_rhs_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_u_map | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_Q_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_registered_for_restart | IBTK::HierarchyIntegrator | protected |
| d_regrid_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_regrid_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_regrid_interval | IBTK::HierarchyIntegrator | protected |
| d_regrid_mode | IBTK::HierarchyIntegrator | protected |
| d_regridding_hierarchy | IBTK::HierarchyIntegrator | private |
| d_rhs_vecs | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_scratch_context | IBTK::HierarchyIntegrator | protected |
| d_scratch_data | IBTK::HierarchyIntegrator | protected |
| d_scratch_variables | IBTK::HierarchyIntegrator | protected |
| d_sol_vecs | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_start_time | IBTK::HierarchyIntegrator | protected |
| d_state_var_init_fcns | IBTK::HierarchyIntegrator | protected |
| d_state_variables | IBTK::HierarchyIntegrator | protected |
| d_tag_buffer | IBTK::HierarchyIntegrator | protected |
| d_u_fcn | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_u_is_div_free | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_u_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
| d_visit_writer | IBTK::HierarchyIntegrator | protected |
| d_workload_idx | IBTK::HierarchyIntegrator | protected |
| d_workload_var | IBTK::HierarchyIntegrator | protected |
| deallocatePatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
| executeApplyGradientDetectorCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) | IBTK::HierarchyIntegrator | protectedvirtual |
| executeIntegrateHierarchyCallbackFcns(double current_time, double new_time, int cycle_num) | IBTK::HierarchyIntegrator | protectedvirtual |
| executePostprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles) | IBTK::HierarchyIntegrator | protectedvirtual |
| executePreprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, int num_cycles) | IBTK::HierarchyIntegrator | protectedvirtual |
| executeRegridHierarchyCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time) | IBTK::HierarchyIntegrator | protectedvirtual |
| getAdvectionVelocity(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getAdvectionVelocityFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getAdvectionVelocityIsDivergenceFree(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getCoarsenAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getCoarsenSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getContext(VariableContextType ctx_type) const | IBTK::HierarchyIntegrator | |
| getConvectiveDifferencingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getConvectiveOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
| getConvectiveOperatorInputDatabase(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getConvectiveOperatorType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getCurrentContext() const | IBTK::HierarchyIntegrator | |
| getCurrentCycleNumber() const | IBTK::HierarchyIntegrator | virtual |
| getCurrentTimeStepSize() const | IBTK::HierarchyIntegrator | virtual |
| getDampingCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getDefaultConvectiveDifferencingType() const | IBAMR::AdvDiffHierarchyIntegrator | |
| getDefaultConvectiveOperatorInputDatabase() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getDefaultConvectiveOperatorType() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getDefaultConvectiveTimeSteppingType() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getDefaultDiffusionTimeSteppingType() const | IBAMR::AdvDiffHierarchyIntegrator | |
| getDefaultInitialConvectiveTimeSteppingType() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getDiffusionCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getDiffusionCoefficientFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getDiffusionTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getEndTime() const | IBTK::HierarchyIntegrator | |
| getFromInput(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db, bool is_from_restart) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | private |
| getFromRestart() | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | private |
| getGhostfillRefineAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getGhostfillRefineSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getGriddingAlgorithm() const | IBTK::HierarchyIntegrator | |
| getHelmholtzRHSOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| getHelmholtzSolver(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| getHierarchyMathOps() const | IBTK::HierarchyIntegrator | |
| getInitialConditions(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getInitialConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| getIntegratorStep() const | IBTK::HierarchyIntegrator | |
| getIntegratorTime() const | IBTK::HierarchyIntegrator | |
| getLevelDt(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const double dt_time, const bool initial_time) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| getMaximumTimeStepSize() | IBTK::HierarchyIntegrator | |
| getMaximumTimeStepSizeSpecialized() override | IBAMR::AdvDiffHierarchyIntegrator | protectedvirtual |
| getMaxIntegratorSteps() const | IBTK::HierarchyIntegrator | |
| getMinimumTimeStepSize() | IBTK::HierarchyIntegrator | |
| getMinimumTimeStepSizeSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| getName() const | IBTK::HierarchyIntegrator | |
| getNewContext() const | IBTK::HierarchyIntegrator | |
| getNumberOfCycles() const override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
| getPatchHierarchy() const | IBTK::HierarchyIntegrator | |
| getPhysicalBcCoefs(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getPlotContext() const | IBTK::HierarchyIntegrator | |
| getProlongRefineAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getProlongRefineSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getResetFunctions(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getResetPriority(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getScratchContext() const | IBTK::HierarchyIntegrator | |
| getSourceTerm(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getSourceTermFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| getStartTime() const | IBTK::HierarchyIntegrator | |
| getVisItDataWriter() const | IBTK::HierarchyIntegrator | |
| getWorkloadDataIndex() const | IBTK::HierarchyIntegrator | |
| HierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart) | IBTK::HierarchyIntegrator | |
| HierarchyIntegrator() | IBTK::HierarchyIntegrator | private |
| HierarchyIntegrator(const HierarchyIntegrator &from)=delete | IBTK::HierarchyIntegrator | private |
| initializeCompositeHierarchyData(double init_data_time, bool initial_time) | IBTK::HierarchyIntegrator | |
| initializeCompositeHierarchyDataSpecialized(double init_data_time, bool initial_time) override | IBAMR::AdvDiffHierarchyIntegrator | protectedvirtual |
| initializeHierarchyIntegrator(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
| initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(nullptr), bool allocate_data=true) override | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy< NDIM >::initializeLevelData(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int level_number, const double init_data_time, const bool can_be_refined, const bool initial_time, const tbox::Pointer< hier::BasePatchLevel< DIM > > old_level=tbox::Pointer< hier::BasePatchLevel< DIM > >(NULL), const bool allocate_data=true)=0 | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | pure virtual |
| initializeLevelDataSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) | IBTK::HierarchyIntegrator | protectedvirtual |
| initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) | IBTK::HierarchyIntegrator | virtual |
| integrateHierarchy(double current_time, double new_time, int cycle_num=0) | IBTK::HierarchyIntegrator | |
| IntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| integrateHierarchySpecialized(double current_time, double new_time, int cycle_num=0) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protectedvirtual |
| isAllocatedPatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
| isDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
| operator=(const AdvDiffSemiImplicitHierarchyIntegrator &that)=delete | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | private |
| postprocessIntegrateHierarchy(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles=1) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
| PostprocessIntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| preprocessIntegrateHierarchy(double current_time, double new_time, int num_cycles=1) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
| PreprocessIntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBTK::HierarchyIntegrator | virtual |
| putToDatabaseSpecialized(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protectedvirtual |
| RefineAlgorithmMap typedef | IBTK::HierarchyIntegrator | private |
| RefinePatchStrategyMap typedef | IBTK::HierarchyIntegrator | private |
| RefineScheduleMap typedef | IBTK::HierarchyIntegrator | private |
| registerAdvectionVelocity(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) | IBAMR::AdvDiffHierarchyIntegrator | virtual |
| registerApplyGradientDetectorCallback(ApplyGradientDetectorCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerChildHierarchyIntegrator(HierarchyIntegrator *child_integrator) | IBTK::HierarchyIntegrator | protected |
| registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
| registerDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
| registerIntegrateHierarchyCallback(IntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer) | IBTK::HierarchyIntegrator | virtual |
| registerParentHierarchyIntegrator(HierarchyIntegrator *parent_integrator) | IBTK::HierarchyIntegrator | protected |
| registerPostprocessIntegrateHierarchyCallback(PostprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerPreprocessIntegrateHierarchyCallback(PreprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
| registerRegridHierarchyCallback(RegridHierarchyCallbackFcnPtr, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerResetFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, ResetPropertiesFcnPtr callback, void *ctx) | IBAMR::AdvDiffHierarchyIntegrator | |
| registerSourceTerm(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var, const bool output_F=true) | IBAMR::AdvDiffHierarchyIntegrator | virtual |
| registerTransportedQuantity(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, const bool Q_output=true) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
| registerVariable(int ¤t_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< CartGridFunction > init_fcn=nullptr, const bool register_for_restart=true) | IBTK::HierarchyIntegrator | |
| registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(nullptr), const bool register_for_restart=true) | IBTK::HierarchyIntegrator | |
| registerVariables() | IBAMR::AdvDiffHierarchyIntegrator | protected |
| registerVisItDataWriter(SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer) | IBTK::HierarchyIntegrator | |
| regriddingHierarchy() const | IBTK::HierarchyIntegrator | inlineprotected |
| regridHierarchy() | IBTK::HierarchyIntegrator | virtual |
| regridHierarchyBeginSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| RegridHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| regridHierarchyEndSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< DIM > > level) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy< NDIM >::resetHierarchyConfiguration(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int coarsest_level, const int finest_level)=0 | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | pure virtual |
| resetHierarchyConfigurationSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protectedvirtual |
| resetIntegratorToPreadvanceState() | IBTK::HierarchyIntegrator | |
| resetIntegratorToPreadvanceStateSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| ResetPropertiesFcnPtr typedef | IBAMR::AdvDiffHierarchyIntegrator | |
| resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const double new_time, const bool can_be_refined) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| resetTimeDependentHierarchyData(double new_time) | IBTK::HierarchyIntegrator | |
| resetTimeDependentHierarchyDataSpecialized(double new_time) | IBTK::HierarchyIntegrator | protectedvirtual |
| Serializable() | SAMRAI::tbox::Serializable | |
| setAdvectionVelocity(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| setAdvectionVelocityFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > u_fcn) | IBAMR::AdvDiffHierarchyIntegrator | |
| setAdvectionVelocityIsDivergenceFree(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var, bool is_div_free) | IBAMR::AdvDiffHierarchyIntegrator | |
| setConvectiveDifferencingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, ConvectiveDifferencingType difference_form) | IBAMR::AdvDiffHierarchyIntegrator | |
| setConvectiveOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< ConvectiveOperator > convective_op) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setConvectiveOperatorInputDatabase(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setConvectiveOperatorNeedsInit(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setConvectiveOperatorsNeedInit() | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setConvectiveOperatorType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, const std::string &op_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, TimeSteppingType convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setDampingCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, double lambda) | IBAMR::AdvDiffHierarchyIntegrator | |
| setDefaultConvectiveDifferencingType(ConvectiveDifferencingType default_convective_difference_form) | IBAMR::AdvDiffHierarchyIntegrator | |
| setDefaultConvectiveOperatorInputDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setDefaultConvectiveOperatorType(const std::string &op_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setDefaultConvectiveTimeSteppingType(TimeSteppingType default_convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setDefaultDiffusionTimeSteppingType(TimeSteppingType default_diffusion_time_stepping_type) | IBAMR::AdvDiffHierarchyIntegrator | |
| setDefaultInitialConvectiveTimeSteppingType(TimeSteppingType default_init_convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setDiffusionCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, double kappa) | IBAMR::AdvDiffHierarchyIntegrator | |
| setDiffusionCoefficientFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > D_fcn) | IBAMR::AdvDiffHierarchyIntegrator | |
| setDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| setDiffusionTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, TimeSteppingType time_stepping_type) | IBAMR::AdvDiffHierarchyIntegrator | |
| setHelmholtzRHSOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< IBTK::LaplaceOperator > helmholtz_rhs_operator) | IBAMR::AdvDiffHierarchyIntegrator | |
| setHelmholtzRHSOperatorNeedsInit(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| setHelmholtzRHSOperatorsNeedInit() | IBAMR::AdvDiffHierarchyIntegrator | |
| setHelmholtzSolver(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< IBTK::PoissonSolver > helmholtz_solver) | IBAMR::AdvDiffHierarchyIntegrator | |
| setHelmholtzSolverNeedsInit(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| setHelmholtzSolversNeedInit() | IBAMR::AdvDiffHierarchyIntegrator | |
| setInitialConditions(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_init) | IBAMR::AdvDiffHierarchyIntegrator | |
| setInitialConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, TimeSteppingType init_convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| setPhysicalBcCoef(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::solv::RobinBcCoefStrategy< NDIM > *Q_bc_coef) | IBAMR::AdvDiffHierarchyIntegrator | |
| setPhysicalBcCoefs(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &Q_bc_coef) | IBAMR::AdvDiffHierarchyIntegrator | |
| setResetPriority(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, int priority) | IBAMR::AdvDiffHierarchyIntegrator | |
| setSourceTerm(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var) | IBAMR::AdvDiffHierarchyIntegrator | |
| setSourceTermFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > F_fcn) | IBAMR::AdvDiffHierarchyIntegrator | |
| setupPlotData() | IBTK::HierarchyIntegrator | |
| setupPlotDataSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| setupTagBuffer(SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) | IBTK::HierarchyIntegrator | protected |
| skipCycle(double current_time, double new_time, int cycle_num=0) | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | |
| stepsRemaining() const | IBTK::HierarchyIntegrator | |
| SYNCH_CURRENT_DATA_ALG | IBTK::HierarchyIntegrator | protectedstatic |
| SYNCH_NEW_DATA_ALG | IBTK::HierarchyIntegrator | protectedstatic |
| synchronizeHierarchyData(VariableContextType ctx_type) | IBTK::HierarchyIntegrator | |
| synchronizeHierarchyDataSpecialized(VariableContextType ctx_type) | IBTK::HierarchyIntegrator | protectedvirtual |
| updateWorkloadEstimates() | IBTK::HierarchyIntegrator | |
| ~AdvDiffHierarchyIntegrator() | IBAMR::AdvDiffHierarchyIntegrator | |
| ~AdvDiffSemiImplicitHierarchyIntegrator()=default | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
| ~DescribedClass() | SAMRAI::tbox::DescribedClass | virtual |
| ~HierarchyIntegrator() | IBTK::HierarchyIntegrator | |
| ~Serializable() | SAMRAI::tbox::Serializable | virtual |
| ~StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
