IBAMR  IBAMR version 0.19.
IBAMR::IBFESurfaceMethod Member List

This is the complete list of members for IBAMR::IBFESurfaceMethod, including all inherited members.

AB2Step(double current_time, double new_time)IBAMR::IBStrategyvirtual
activateLagrangianStructure(int structure_number=0, int level_number=std::numeric_limits< int >::max())IBAMR::IBStrategyvirtual
addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) overrideIBAMR::IBFESurfaceMethodvirtual
advanceLevel(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) overrideIBAMR::IBFESurfaceMethod
StandardTagAndInitStrategy< NDIM >::applyGradientDetector(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int level_number, const double error_data_time, const int tag_index, const bool initial_time, const bool uses_richardson_extrapolation_too)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< DIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
backwardEulerStep(double current_time, double new_time)IBAMR::IBStrategyvirtual
beginDataRedistribution(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) overrideIBAMR::IBFESurfaceMethodvirtual
checkDoubleCountingIntersection(int axis, const double *dx, const libMesh::VectorValue< double > &n, const libMesh::Point &x, const libMesh::Point &xi, const SAMRAI::pdat::SideIndex< NDIM > &i_s, const SAMRAI::pdat::SideIndex< NDIM > &i_s_prime, const std::vector< libMesh::Point > &candidate_coords, const std::vector< libMesh::Point > &candidate_ref_coords, const std::vector< libMesh::VectorValue< double > > &candidate_normals)IBAMR::IBFESurfaceMethodprotected
coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< DIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< DIM > > coarser_level, const double coarsen_data_time, const bool before_advance)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
commonConstructor(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, const std::vector< libMesh::MeshBase * > &meshes, int max_levels, bool register_for_restart, const std::string &restart_read_dirname, unsigned int restart_restore_number)IBAMR::IBFESurfaceMethodprivate
computeLagrangianFluidSource(double data_time)IBAMR::IBStrategyvirtual
computeLagrangianForce(double data_time) overrideIBAMR::IBFESurfaceMethodvirtual
COORD_MAPPING_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
CoordinateMappingFcnPtr typedefIBAMR::IBFESurfaceMethod
COORDS_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
d_compute_fluid_tractionIBAMR::IBFESurfaceMethodprotected
d_coordinate_mapping_fcn_dataIBAMR::IBFESurfaceMethodprotected
d_current_timeIBAMR::IBFESurfaceMethodprotected
d_default_interp_specIBAMR::IBFESurfaceMethodprotected
d_default_quad_orderIBAMR::IBFESurfaceMethodprotected
d_default_quad_typeIBAMR::IBFESurfaceMethodprotected
d_default_spread_specIBAMR::IBFESurfaceMethodprotected
d_default_workload_specIBAMR::IBFESurfaceMethodprotected
d_do_logIBAMR::IBFESurfaceMethodprotected
d_DP_vecsIBAMR::IBFESurfaceMethodprotected
d_equation_systemsIBAMR::IBFESurfaceMethodprotected
d_eulerian_data_cacheIBAMR::IBFESurfaceMethodprotected
d_F_vecsIBAMR::IBFESurfaceMethodprotected
d_fe_dataIBAMR::IBFESurfaceMethodprotected
d_fe_data_initializedIBAMR::IBFESurfaceMethodprotected
d_fe_data_managersIBAMR::IBFESurfaceMethodprotected
d_fe_equation_systems_initializedIBAMR::IBFESurfaceMethodprotected
d_fe_familyIBAMR::IBFESurfaceMethodprotected
d_fe_orderIBAMR::IBFESurfaceMethodprotected
d_ghost_data_accumulatorIBAMR::IBFESurfaceMethodprotected
d_ghostsIBAMR::IBFESurfaceMethodprotected
d_gridding_algIBAMR::IBFESurfaceMethodprotected
d_half_timeIBAMR::IBFESurfaceMethodprotected
d_hierarchyIBAMR::IBFESurfaceMethodprotected
d_ib_solverIBAMR::IBStrategyprotected
d_initial_velocity_fcn_dataIBAMR::IBFESurfaceMethodprotected
d_input_dbIBAMR::IBFESurfaceMethodprivate
d_interp_specIBAMR::IBFESurfaceMethodprotected
d_is_initializedIBAMR::IBFESurfaceMethodprotected
d_lag_surface_force_fcn_dataIBAMR::IBFESurfaceMethodprotected
d_lag_surface_force_integralIBAMR::IBFESurfaceMethodprotected
d_lag_surface_pressure_fcn_dataIBAMR::IBFESurfaceMethodprotected
d_libmesh_restart_file_extensionIBAMR::IBFESurfaceMethodprotected
d_libmesh_restart_read_dirIBAMR::IBFESurfaceMethodprotected
d_libmesh_restart_restore_numberIBAMR::IBFESurfaceMethodprotected
d_max_level_numberIBAMR::IBFESurfaceMethodprotected
d_meshesIBAMR::IBFESurfaceMethodprotected
d_new_timeIBAMR::IBFESurfaceMethodprotected
d_normalize_pressure_jumpIBAMR::IBFESurfaceMethodprotected
d_num_partsIBAMR::IBFESurfaceMethodprotected
d_object_nameIBAMR::IBFESurfaceMethodprotected
d_p_calc_widthIBAMR::IBFESurfaceMethodprotected
d_perturb_fe_mesh_nodesIBAMR::IBFESurfaceMethodprotected
d_pressure_jump_fe_familyIBAMR::IBFESurfaceMethodprotected
d_registered_for_restartIBAMR::IBFESurfaceMethodprotected
d_spread_specIBAMR::IBFESurfaceMethodprotected
d_tau_fe_familyIBAMR::IBFESurfaceMethodprotected
d_U_n_vecsIBAMR::IBFESurfaceMethodprotected
d_U_systemsIBAMR::IBFESurfaceMethodprotected
d_U_t_vecsIBAMR::IBFESurfaceMethodprotected
d_U_vecsIBAMR::IBFESurfaceMethodprotected
d_use_consistent_mass_matrixIBAMR::IBFESurfaceMethodprotected
d_use_direct_forcingIBAMR::IBFESurfaceMethodprotected
d_use_fixed_coupling_opsIBAMR::IBStrategyprotected
d_use_pressure_jump_conditionsIBAMR::IBFESurfaceMethodprotected
d_use_velocity_jump_conditionsIBAMR::IBFESurfaceMethodprotected
d_velocity_jump_fe_familyIBAMR::IBFESurfaceMethodprotected
d_wss_calc_widthIBAMR::IBFESurfaceMethodprotected
d_wss_fe_familyIBAMR::IBFESurfaceMethodprotected
d_X_vecsIBAMR::IBFESurfaceMethodprotected
endDataRedistribution(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) overrideIBAMR::IBFESurfaceMethodvirtual
FORCE_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
forwardEulerStep(double current_time, double new_time) overrideIBAMR::IBFESurfaceMethodvirtual
getCoarsenAlgorithm(const std::string &name) constIBAMR::IBStrategyprotected
getCoarsenSchedules(const std::string &name) constIBAMR::IBStrategyprotected
getCoarsestPatchLevelNumber() constIBAMR::IBFESurfaceMethodprotected
getDefaultInterpSpec() constIBAMR::IBFESurfaceMethod
getDefaultSpreadSpec() constIBAMR::IBFESurfaceMethod
getFEDataManager(unsigned int part=0) constIBAMR::IBFESurfaceMethod
getFinestPatchLevelNumber() constIBAMR::IBFESurfaceMethodprotected
getFromInput(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db, bool is_from_restart)IBAMR::IBFESurfaceMethodprivate
getFromRestart()IBAMR::IBFESurfaceMethodprivate
getGhostfillRefineAlgorithm(const std::string &name) constIBAMR::IBStrategyprotected
getGhostfillRefineSchedules(const std::string &name) constIBAMR::IBStrategyprotected
getHierarchyMathOps() constIBAMR::IBStrategyprotected
getINSHierarchyIntegrator() constIBAMR::IBStrategyprotected
getLagrangianStructureIsActivated(int structure_number=0, int level_number=std::numeric_limits< int >::max()) constIBAMR::IBStrategyvirtual
getLevelDt(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const double dt_time, const bool initial_time)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
getMaxPointDisplacement() constIBAMR::IBStrategyvirtual
getMinimumGhostCellWidth() const overrideIBAMR::IBFESurfaceMethodvirtual
getPressureHierarchyDataOps() constIBAMR::IBStrategyprotected
getProlongRefineAlgorithm(const std::string &name) constIBAMR::IBStrategyprotected
getProlongRefineSchedules(const std::string &name) constIBAMR::IBStrategyprotected
getSurfaceForceIntegral(unsigned int part=0) constIBAMR::IBFESurfaceMethod
getVelocityHierarchyDataOps() constIBAMR::IBStrategyprotected
hasFluidSources() constIBAMR::IBStrategyvirtual
IBFESurfaceMethod(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, libMesh::MeshBase *mesh, int max_levels, bool register_for_restart=true, const std::string &restart_read_dirname="", unsigned int restart_restore_number=0)IBAMR::IBFESurfaceMethod
IBFESurfaceMethod(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, const std::vector< libMesh::MeshBase * > &meshes, int max_levels, bool register_for_restart=true, const std::string &restart_read_dirname="", unsigned int restart_restore_number=0)IBAMR::IBFESurfaceMethod
IBFESurfaceMethod()=deleteIBAMR::IBFESurfaceMethodprivate
IBFESurfaceMethod(const IBFESurfaceMethod &from)=deleteIBAMR::IBFESurfaceMethodprivate
IBStrategy()=defaultIBAMR::IBStrategy
IBStrategy(const IBStrategy &from)=deleteIBAMR::IBStrategyprivate
imposeJumpConditions(const int f_data_idx, libMesh::PetscVector< double > &DP_ghost_vec, libMesh::PetscVector< double > &X_ghost_vec, const double data_time, const unsigned int part)IBAMR::IBFESurfaceMethodprotected
inactivateLagrangianStructure(int structure_number=0, int level_number=std::numeric_limits< int >::max())IBAMR::IBStrategyvirtual
initializeCoordinates(unsigned int part)IBAMR::IBFESurfaceMethodprotected
initializeFEData()IBAMR::IBFESurfaceMethod
initializeFEEquationSystems()IBAMR::IBFESurfaceMethod
initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) overrideIBAMR::IBFESurfaceMethod
StandardTagAndInitStrategy< NDIM >::initializeLevelData(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int level_number, const double init_data_time, const bool can_be_refined, const bool initial_time, const tbox::Pointer< hier::BasePatchLevel< DIM > > old_level=tbox::Pointer< hier::BasePatchLevel< DIM > >(NULL), const bool allocate_data=true)=0SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >pure virtual
initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg, int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, int integrator_step, double init_data_time, bool initial_time) overrideIBAMR::IBFESurfaceMethodvirtual
initializeVelocity(unsigned int part)IBAMR::IBFESurfaceMethodprotected
InitialVelocityFcnPtr typedefIBAMR::IBFESurfaceMethod
interpolatePressure(int p_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &p_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &p_ghost_fill_scheds, double data_time)IBAMR::IBStrategyvirtual
interpolateVelocity(int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, double data_time) overrideIBAMR::IBFESurfaceMethodvirtual
LagSurfaceForceFcnPtr typedefIBAMR::IBFESurfaceMethod
LagSurfacePressureFcnPtr typedefIBAMR::IBFESurfaceMethod
midpointStep(double current_time, double new_time) overrideIBAMR::IBFESurfaceMethodvirtual
NORMAL_VELOCITY_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
operator=(const IBFESurfaceMethod &that)=deleteIBAMR::IBFESurfaceMethodprivate
postprocessData()IBAMR::IBStrategyvirtual
postprocessIntegrateData(double current_time, double new_time, int num_cycles) overrideIBAMR::IBFESurfaceMethodvirtual
postprocessSolveFluidEquations(double current_time, double new_time, int cycle_num)IBAMR::IBStrategyvirtual
preprocessIntegrateData(double current_time, double new_time, int num_cycles) overrideIBAMR::IBFESurfaceMethodvirtual
preprocessSolveFluidEquations(double current_time, double new_time, int cycle_num)IBAMR::IBStrategyvirtual
PRESSURE_IN_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
PRESSURE_JUMP_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
PRESSURE_OUT_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) overrideIBAMR::IBFESurfaceMethodvirtual
registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr)IBAMR::IBStrategyprotected
registerEulerianCommunicationAlgorithms()IBAMR::IBStrategyvirtual
registerEulerianVariables() overrideIBAMR::IBFESurfaceMethodvirtual
registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr)IBAMR::IBStrategyprotected
registerIBHierarchyIntegrator(IBHierarchyIntegrator *ib_solver)IBAMR::IBStrategyvirtual
registerInitialCoordinateMappingFunction(const CoordinateMappingFcnData &data, unsigned int part=0)IBAMR::IBFESurfaceMethod
registerInitialVelocityFunction(const InitialVelocityFcnData &data, unsigned int part=0)IBAMR::IBFESurfaceMethod
registerLagSurfaceForceFunction(const LagSurfaceForceFcnData &data, unsigned int part=0)IBAMR::IBFESurfaceMethod
registerLagSurfacePressureFunction(const LagSurfacePressureFcnData &data, unsigned int part=0)IBAMR::IBFESurfaceMethod
registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer, int workload_data_idx)IBAMR::IBStrategyvirtual
registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr)IBAMR::IBStrategyprotected
registerVariable(int &current_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< IBTK::CartGridFunction > init_fcn=nullptr, const bool register_for_restart=true)IBAMR::IBStrategyprotected
registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(nullptr), const bool register_for_restart=true)IBAMR::IBStrategyprotected
resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< DIM > > level)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) overrideIBAMR::IBFESurfaceMethod
StandardTagAndInitStrategy< NDIM >::resetHierarchyConfiguration(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int coarsest_level, const int finest_level)=0SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >pure virtual
resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const double new_time, const bool can_be_refined)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
Serializable()SAMRAI::tbox::Serializable
setInterpSpec(const IBTK::FEDataManager::InterpSpec &interp_spec, unsigned int part=0)IBAMR::IBFESurfaceMethod
setSpreadSpec(const IBTK::FEDataManager::SpreadSpec &spread_spec, unsigned int part=0)IBAMR::IBFESurfaceMethod
setupTagBuffer(SAMRAI::tbox::Array< int > &tag_buffer, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) const overrideIBAMR::IBFESurfaceMethodvirtual
setUseFixedLEOperators(bool use_fixed_coupling_ops=true)IBAMR::IBStrategy
setUseMultistepTimeStepping(unsigned int n_previous_steps=1)IBAMR::IBStrategyvirtual
spreadFluidSource(int q_data_idx, IBTK::RobinPhysBdryPatchStrategy *q_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &q_prolongation_scheds, double data_time)IBAMR::IBStrategyvirtual
spreadForce(int f_data_idx, IBTK::RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds, double data_time) overrideIBAMR::IBFESurfaceMethodvirtual
StandardTagAndInitStrategy()SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >
TANGENTIAL_VELOCITY_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
TAU_IN_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
TAU_OUT_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
trapezoidalStep(double current_time, double new_time) overrideIBAMR::IBFESurfaceMethodvirtual
updateCoordinateMapping(unsigned int part)IBAMR::IBFESurfaceMethodprotected
updateFixedLEOperators()IBAMR::IBStrategyvirtual
VELOCITY_JUMP_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
VELOCITY_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
writeFEDataToRestartFile(const std::string &restart_dump_dirname, unsigned int time_step_number)IBAMR::IBFESurfaceMethod
WSS_IN_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
WSS_OUT_SYSTEM_NAMEIBAMR::IBFESurfaceMethodstatic
~DescribedClass()SAMRAI::tbox::DescribedClassvirtual
~IBFESurfaceMethod()IBAMR::IBFESurfaceMethod
~Serializable()SAMRAI::tbox::Serializablevirtual
~StandardTagAndInitStrategy()SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual