| addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) | IBTK::HierarchyIntegrator | protectedvirtual |
| advanceHierarchy(double dt) | IBTK::HierarchyIntegrator | virtual |
| advanceLevel(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| allocatePatchData(int data_idx, double data_time, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
| applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy< NDIM >::applyGradientDetector(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int level_number, const double error_data_time, const int tag_index, const bool initial_time, const bool uses_richardson_extrapolation_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| ApplyGradientDetectorCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| applyGradientDetectorSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< DIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| atRegridPoint() const | IBTK::HierarchyIntegrator | |
| atRegridPointSpecialized() const | IBTK::HierarchyIntegrator | protectedvirtual |
| atRegridTimeStep() const | IBTK::HierarchyIntegrator | inlineprotected |
| buildHierarchyMathOps(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) | IBTK::HierarchyIntegrator | protected |
| CoarsenAlgorithmMap typedef | IBTK::HierarchyIntegrator | private |
| coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< DIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< DIM > > coarser_level, const double coarsen_data_time, const bool before_advance) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| CoarsenPatchStrategyMap typedef | IBTK::HierarchyIntegrator | private |
| CoarsenScheduleMap typedef | IBTK::HierarchyIntegrator | private |
| computeDivSourceTerm(int F_idx, int Q_idx, int U_idx) | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_adv_diff_hier_integrators | IBAMR::INSHierarchyIntegrator | protected |
| d_apply_gradient_detector_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_apply_gradient_detector_callbacks | IBTK::HierarchyIntegrator | protected |
| d_at_regrid_time_step | IBTK::HierarchyIntegrator | private |
| d_bc_coefs | IBAMR::INSHierarchyIntegrator | protected |
| d_bdry_extrap_type | IBTK::HierarchyIntegrator | protected |
| d_cfl_current | IBAMR::INSHierarchyIntegrator | protected |
| d_cfl_max | IBAMR::INSHierarchyIntegrator | protected |
| d_child_integrators | IBTK::HierarchyIntegrator | protected |
| d_coarsen_algs | IBTK::HierarchyIntegrator | private |
| d_coarsen_scheds | IBTK::HierarchyIntegrator | private |
| d_coarsen_strategies | IBTK::HierarchyIntegrator | private |
| d_coarsest_reset_ln | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_convective_difference_form | IBAMR::INSHierarchyIntegrator | protected |
| d_convective_op | IBAMR::INSHierarchyIntegrator | protected |
| d_convective_op_input_db | IBAMR::INSHierarchyIntegrator | protected |
| d_convective_op_needs_init | IBAMR::INSHierarchyIntegrator | protected |
| d_convective_op_type | IBAMR::INSHierarchyIntegrator | protected |
| d_convective_time_stepping_type | IBAMR::INSHierarchyIntegrator | protected |
| d_copy_scratch_to_current_fast | IBTK::HierarchyIntegrator | protected |
| d_copy_scratch_to_current_slow | IBTK::HierarchyIntegrator | protected |
| d_creeping_flow | IBAMR::INSHierarchyIntegrator | protected |
| d_current_context | IBTK::HierarchyIntegrator | protected |
| d_current_cycle_num | IBTK::HierarchyIntegrator | protected |
| d_current_data | IBTK::HierarchyIntegrator | protected |
| d_current_dt | IBTK::HierarchyIntegrator | protected |
| d_current_num_cycles | IBTK::HierarchyIntegrator | protected |
| d_default_bc_coefs | IBAMR::INSHierarchyIntegrator | protected |
| d_Div_u_ADV_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Div_u_ADV_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Div_U_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Div_U_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_Div_U_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_dt_growth_factor | IBTK::HierarchyIntegrator | protected |
| d_dt_init | IBTK::HierarchyIntegrator | protected |
| d_dt_max | IBTK::HierarchyIntegrator | protected |
| d_dt_min | IBTK::HierarchyIntegrator | protected |
| d_dt_previous | IBTK::HierarchyIntegrator | protected |
| d_EE_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_enable_logging | IBTK::HierarchyIntegrator | protected |
| d_enable_logging_solver_iterations | IBTK::HierarchyIntegrator | protected |
| d_end_time | IBTK::HierarchyIntegrator | protected |
| d_F_coarsen_type | IBAMR::INSHierarchyIntegrator | protected |
| d_F_current_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_F_div_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_F_div_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_F_fcn | IBAMR::INSHierarchyIntegrator | protected |
| d_F_new_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_F_refine_type | IBAMR::INSHierarchyIntegrator | protected |
| d_F_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_F_scratch_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_F_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_fill_after_regrid_bc_idxs | IBTK::HierarchyIntegrator | protected |
| d_fill_after_regrid_phys_bdry_bc_op | IBTK::HierarchyIntegrator | protected |
| d_fill_after_regrid_prolong_alg | IBTK::HierarchyIntegrator | protected |
| d_finest_reset_ln | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_ghostfill_algs | IBTK::HierarchyIntegrator | private |
| d_ghostfill_scheds | IBTK::HierarchyIntegrator | private |
| d_ghostfill_strategies | IBTK::HierarchyIntegrator | private |
| d_Grad_P_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Grad_P_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Grad_Phi_cc_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Grad_Phi_cc_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Grad_Phi_fc_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Grad_Phi_fc_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_gridding_alg | IBTK::HierarchyIntegrator | protected |
| d_hier_cc_data_ops | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_hier_fc_data_ops | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_hier_math_ops | IBTK::HierarchyIntegrator | protected |
| d_hierarchy | IBTK::HierarchyIntegrator | protected |
| d_hierarchy_is_initialized | IBTK::HierarchyIntegrator | protected |
| d_init_convective_time_stepping_type | IBAMR::INSHierarchyIntegrator | protected |
| d_integrate_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_integrator_is_initialized | IBAMR::INSHierarchyIntegrator | protected |
| d_integrator_step | IBTK::HierarchyIntegrator | protected |
| d_integrator_time | IBTK::HierarchyIntegrator | protected |
| d_load_balancer | IBTK::HierarchyIntegrator | protected |
| d_manage_hier_math_ops | IBTK::HierarchyIntegrator | protected |
| d_max_integrator_steps | IBTK::HierarchyIntegrator | protected |
| d_may_need_to_reset_hierarchy_configuration | IBTK::HierarchyIntegrator | protected |
| d_N_coarsen_type | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_N_old_current_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_N_old_new_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_N_old_scratch_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_N_old_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_N_refine_type | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_N_vec | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_new_context | IBTK::HierarchyIntegrator | protected |
| d_new_data | IBTK::HierarchyIntegrator | protected |
| d_no_fill_op | IBAMR::INSHierarchyIntegrator | protected |
| d_normalize_pressure | IBAMR::INSHierarchyIntegrator | protected |
| d_normalize_velocity | IBAMR::INSHierarchyIntegrator | protected |
| d_num_cycles | IBTK::HierarchyIntegrator | protected |
| d_object_name | IBTK::HierarchyIntegrator | protected |
| d_Omega_abs_thresh | IBAMR::INSHierarchyIntegrator | protected |
| d_Omega_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Omega_rel_thresh | IBAMR::INSHierarchyIntegrator | protected |
| d_Omega_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_Omega_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_output_Div_U | IBAMR::INSHierarchyIntegrator | protected |
| d_output_EE | IBAMR::INSHierarchyIntegrator | protected |
| d_output_F | IBAMR::INSHierarchyIntegrator | protected |
| d_output_Omega | IBAMR::INSHierarchyIntegrator | protected |
| d_output_P | IBAMR::INSHierarchyIntegrator | protected |
| d_output_Q | IBAMR::INSHierarchyIntegrator | protected |
| d_output_U | IBAMR::INSHierarchyIntegrator | protected |
| d_P_bc_coef | IBAMR::INSHierarchyIntegrator | protected |
| d_P_bdry_bc_fill_op | IBAMR::INSHierarchyIntegrator | protected |
| d_P_coarsen_type | IBAMR::INSHierarchyIntegrator | protected |
| d_P_current_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_P_init | IBAMR::INSHierarchyIntegrator | protected |
| d_P_new_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_P_refine_type | IBAMR::INSHierarchyIntegrator | protected |
| d_P_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_P_scratch_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_P_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_parent_integrator | IBTK::HierarchyIntegrator | protected |
| d_Phi_bc_coef | IBAMR::INSHierarchyIntegrator | protected |
| d_Phi_bdry_bc_fill_op | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Phi_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Phi_rhs_vec | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Phi_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Phi_vec | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_plot_context | IBTK::HierarchyIntegrator | protected |
| d_plot_data | IBTK::HierarchyIntegrator | protected |
| d_postprocess_integrate_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_postprocess_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_preprocess_integrate_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_preprocess_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_pressure_precond_db | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_precond_type | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_solver | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_solver_db | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_solver_needs_init | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_solver_type | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_sub_precond_db | IBAMR::INSHierarchyIntegrator | protected |
| d_pressure_sub_precond_type | IBAMR::INSHierarchyIntegrator | protected |
| d_problem_coefs | IBAMR::INSHierarchyIntegrator | protected |
| d_projection_method_type | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_prolong_algs | IBTK::HierarchyIntegrator | private |
| d_prolong_scheds | IBTK::HierarchyIntegrator | private |
| d_prolong_strategies | IBTK::HierarchyIntegrator | private |
| d_Q_bdry_bc_fill_op | IBAMR::INSHierarchyIntegrator | protected |
| d_Q_coarsen_type | IBAMR::INSHierarchyIntegrator | protected |
| d_Q_current_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Q_fcn | IBAMR::INSHierarchyIntegrator | protected |
| d_Q_new_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Q_refine_type | IBAMR::INSHierarchyIntegrator | protected |
| d_Q_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_Q_scratch_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_Q_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_registered_for_restart | IBTK::HierarchyIntegrator | protected |
| d_regrid_hierarchy_callback_ctxs | IBTK::HierarchyIntegrator | protected |
| d_regrid_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
| d_regrid_interval | IBTK::HierarchyIntegrator | protected |
| d_regrid_max_div_growth_factor | IBAMR::INSHierarchyIntegrator | protected |
| d_regrid_mode | IBTK::HierarchyIntegrator | protected |
| d_regrid_projection_precond_db | IBAMR::INSHierarchyIntegrator | protected |
| d_regrid_projection_precond_type | IBAMR::INSHierarchyIntegrator | protected |
| d_regrid_projection_solver_db | IBAMR::INSHierarchyIntegrator | protected |
| d_regrid_projection_solver_type | IBAMR::INSHierarchyIntegrator | protected |
| d_regrid_projection_sub_precond_db | IBAMR::INSHierarchyIntegrator | protected |
| d_regrid_projection_sub_precond_type | IBAMR::INSHierarchyIntegrator | protected |
| d_regridding_hierarchy | IBTK::HierarchyIntegrator | private |
| d_scratch_context | IBTK::HierarchyIntegrator | protected |
| d_scratch_data | IBTK::HierarchyIntegrator | protected |
| d_scratch_variables | IBTK::HierarchyIntegrator | protected |
| d_start_time | IBTK::HierarchyIntegrator | protected |
| d_state_var_init_fcns | IBTK::HierarchyIntegrator | protected |
| d_state_variables | IBTK::HierarchyIntegrator | protected |
| d_tag_buffer | IBTK::HierarchyIntegrator | protected |
| d_traction_bc_type | IBAMR::INSHierarchyIntegrator | protected |
| d_u_ADV_coarsen_type | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_u_ADV_current_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_adv_diff_var | IBAMR::INSHierarchyIntegrator | protected |
| d_u_ADV_new_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_u_ADV_refine_type | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_u_ADV_scratch_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_u_ADV_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_adv_vec | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_bc_coefs | IBAMR::INSHierarchyIntegrator | protected |
| d_U_bdry_bc_fill_op | IBAMR::INSHierarchyIntegrator | protected |
| d_U_coarsen_type | IBAMR::INSHierarchyIntegrator | protected |
| d_U_current_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_init | IBAMR::INSHierarchyIntegrator | protected |
| d_U_new_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_nul_vecs | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_refine_type | IBAMR::INSHierarchyIntegrator | protected |
| d_U_rhs_vec | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_scale | IBAMR::INSHierarchyIntegrator | protected |
| d_U_scratch_idx | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_scratch_vec | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_U_star_bc_coefs | IBAMR::INSHierarchyIntegrator | protected |
| d_U_var | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_use_div_sink_drag_term | IBAMR::INSHierarchyIntegrator | protected |
| d_using_2nd_order_pressure_update | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_using_vorticity_tagging | IBAMR::INSHierarchyIntegrator | protected |
| d_vectors_need_init | IBAMR::INSCollocatedHierarchyIntegrator | private |
| d_velocity_precond_db | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_precond_type | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_solver | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_solver_db | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_solver_needs_init | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_solver_type | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_sub_precond_db | IBAMR::INSHierarchyIntegrator | protected |
| d_velocity_sub_precond_type | IBAMR::INSHierarchyIntegrator | protected |
| d_viscous_time_stepping_type | IBAMR::INSHierarchyIntegrator | protected |
| d_visit_writer | IBTK::HierarchyIntegrator | protected |
| d_workload_idx | IBTK::HierarchyIntegrator | protected |
| d_workload_var | IBTK::HierarchyIntegrator | protected |
| deallocatePatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
| executeApplyGradientDetectorCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) | IBTK::HierarchyIntegrator | protectedvirtual |
| executeIntegrateHierarchyCallbackFcns(double current_time, double new_time, int cycle_num) | IBTK::HierarchyIntegrator | protectedvirtual |
| executePostprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles) | IBTK::HierarchyIntegrator | protectedvirtual |
| executePreprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, int num_cycles) | IBTK::HierarchyIntegrator | protectedvirtual |
| executeRegridHierarchyCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time) | IBTK::HierarchyIntegrator | protectedvirtual |
| getAdvectionVelocityVariable() const | IBAMR::INSHierarchyIntegrator | |
| getBodyForceVariable() const | IBAMR::INSHierarchyIntegrator | |
| getCoarsenAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getCoarsenSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getContext(VariableContextType ctx_type) const | IBTK::HierarchyIntegrator | |
| getConvectiveDifferencingType() const | IBAMR::INSHierarchyIntegrator | |
| getConvectiveOperator() override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| getConvectiveOperatorType() const | IBAMR::INSHierarchyIntegrator | |
| getConvectiveTimeSteppingType() const | IBAMR::INSHierarchyIntegrator | |
| getCreepingFlow() const | IBAMR::INSHierarchyIntegrator | |
| getCurrentCFLNumber() const | IBAMR::INSHierarchyIntegrator | virtual |
| getCurrentContext() const | IBTK::HierarchyIntegrator | |
| getCurrentCycleNumber() const | IBTK::HierarchyIntegrator | virtual |
| getCurrentTimeStepSize() const | IBTK::HierarchyIntegrator | virtual |
| getEndTime() const | IBTK::HierarchyIntegrator | |
| getFluidSourceVariable() const | IBAMR::INSHierarchyIntegrator | |
| getFromInput(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db, bool is_from_restart) | IBAMR::INSHierarchyIntegrator | private |
| getFromRestart() | IBAMR::INSHierarchyIntegrator | private |
| getGhostfillRefineAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getGhostfillRefineSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getGriddingAlgorithm() const | IBTK::HierarchyIntegrator | |
| getHierarchyMathOps() const | IBTK::HierarchyIntegrator | |
| getInitialConvectiveTimeSteppingType() const | IBAMR::INSHierarchyIntegrator | |
| getIntegratorStep() const | IBTK::HierarchyIntegrator | |
| getIntegratorTime() const | IBTK::HierarchyIntegrator | |
| getIntermediateVelocityBoundaryConditions() const | IBAMR::INSHierarchyIntegrator | |
| getLevelDt(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const double dt_time, const bool initial_time) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| getMaximumTimeStepSize() | IBTK::HierarchyIntegrator | |
| getMaximumTimeStepSizeSpecialized() override | IBAMR::INSHierarchyIntegrator | protectedvirtual |
| getMaximumVorticityMagnitude(const int Omega_idx) | IBAMR::INSHierarchyIntegrator | protected |
| getMaxIntegratorSteps() const | IBTK::HierarchyIntegrator | |
| getMinimumTimeStepSize() | IBTK::HierarchyIntegrator | |
| getMinimumTimeStepSizeSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| getName() const | IBTK::HierarchyIntegrator | |
| getNewContext() const | IBTK::HierarchyIntegrator | |
| getNumberOfCycles() const override | IBAMR::INSHierarchyIntegrator | virtual |
| getPatchHierarchy() const | IBTK::HierarchyIntegrator | |
| getPlotContext() const | IBTK::HierarchyIntegrator | |
| getPressureBoundaryConditions() const | IBAMR::INSHierarchyIntegrator | virtual |
| getPressureSubdomainSolver() override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| getPressureVariable() const | IBAMR::INSHierarchyIntegrator | |
| getProjectionBoundaryConditions() const | IBAMR::INSHierarchyIntegrator | |
| getProlongRefineAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getProlongRefineSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
| getScratchContext() const | IBTK::HierarchyIntegrator | |
| getStableTimestep(SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch) const override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| IBAMR::INSHierarchyIntegrator::getStableTimestep(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchLevel< NDIM > > level) const | IBAMR::INSHierarchyIntegrator | protected |
| getStartTime() const | IBTK::HierarchyIntegrator | |
| getStokesSpecifications() const | IBAMR::INSHierarchyIntegrator | |
| getVelocityBoundaryConditions() const | IBAMR::INSHierarchyIntegrator | virtual |
| getVelocityDivergenceVariable() const | IBAMR::INSHierarchyIntegrator | |
| getVelocitySubdomainSolver() override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| getVelocityVariable() const | IBAMR::INSHierarchyIntegrator | |
| getViscousTimeSteppingType() const | IBAMR::INSHierarchyIntegrator | |
| getVisItDataWriter() const | IBTK::HierarchyIntegrator | |
| getWorkloadDataIndex() const | IBTK::HierarchyIntegrator | |
| HierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart) | IBTK::HierarchyIntegrator | |
| HierarchyIntegrator() | IBTK::HierarchyIntegrator | private |
| HierarchyIntegrator(const HierarchyIntegrator &from)=delete | IBTK::HierarchyIntegrator | private |
| initializeCompositeHierarchyData(double init_data_time, bool initial_time) | IBTK::HierarchyIntegrator | |
| initializeCompositeHierarchyDataSpecialized(double init_data_time, bool initial_time) override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| initializeHierarchyIntegrator(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(nullptr), bool allocate_data=true) override | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy< NDIM >::initializeLevelData(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int level_number, const double init_data_time, const bool can_be_refined, const bool initial_time, const tbox::Pointer< hier::BasePatchLevel< DIM > > old_level=tbox::Pointer< hier::BasePatchLevel< DIM > >(NULL), const bool allocate_data=true)=0 | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | pure virtual |
| initializeLevelDataSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| INSCollocatedHierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true) | IBAMR::INSCollocatedHierarchyIntegrator | |
| INSCollocatedHierarchyIntegrator()=delete | IBAMR::INSCollocatedHierarchyIntegrator | private |
| INSCollocatedHierarchyIntegrator(const INSCollocatedHierarchyIntegrator &from)=delete | IBAMR::INSCollocatedHierarchyIntegrator | private |
| INSHierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > U_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > P_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > F_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > Q_var, bool register_for_restart) | IBAMR::INSHierarchyIntegrator | protected |
| INSHierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > U_var, std::string U_default_coarsen_type, std::string U_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > P_var, std::string P_default_coarsen_type, std::string P_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > F_var, std::string F_default_coarsen_type, std::string F_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > Q_var, std::string Q_default_coarsen_type, std::string Q_default_refine_type, bool register_for_restart) | IBAMR::INSHierarchyIntegrator | protected |
| INSHierarchyIntegrator() | IBAMR::INSHierarchyIntegrator | private |
| INSHierarchyIntegrator(const INSHierarchyIntegrator &from)=delete | IBAMR::INSHierarchyIntegrator | private |
| integrateHierarchy(double current_time, double new_time, int cycle_num=0) | IBTK::HierarchyIntegrator | |
| IntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| integrateHierarchySpecialized(double current_time, double new_time, int cycle_num=0) override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| isAllocatedPatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
| operator=(const INSCollocatedHierarchyIntegrator &that)=delete | IBAMR::INSCollocatedHierarchyIntegrator | private |
| postprocessIntegrateHierarchy(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles=1) override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| PostprocessIntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| preprocessIntegrateHierarchy(double current_time, double new_time, int num_cycles=1) override | IBAMR::INSCollocatedHierarchyIntegrator | virtual |
| PreprocessIntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBTK::HierarchyIntegrator | virtual |
| putToDatabaseSpecialized(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBAMR::INSHierarchyIntegrator | protectedvirtual |
| RefineAlgorithmMap typedef | IBTK::HierarchyIntegrator | private |
| RefinePatchStrategyMap typedef | IBTK::HierarchyIntegrator | private |
| RefineScheduleMap typedef | IBTK::HierarchyIntegrator | private |
| registerAdvDiffHierarchyIntegrator(SAMRAI::tbox::Pointer< AdvDiffHierarchyIntegrator > adv_diff_hier_integrator) | IBAMR::INSHierarchyIntegrator | |
| registerApplyGradientDetectorCallback(ApplyGradientDetectorCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerBodyForceFunction(SAMRAI::tbox::Pointer< IBTK::CartGridFunction > F_fcn) | IBAMR::INSHierarchyIntegrator | |
| registerChildHierarchyIntegrator(HierarchyIntegrator *child_integrator) | IBTK::HierarchyIntegrator | protected |
| registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
| registerFluidSourceFunction(SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_fcn) | IBAMR::INSHierarchyIntegrator | |
| registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
| registerIntegrateHierarchyCallback(IntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer) | IBTK::HierarchyIntegrator | virtual |
| registerParentHierarchyIntegrator(HierarchyIntegrator *parent_integrator) | IBTK::HierarchyIntegrator | protected |
| registerPhysicalBoundaryConditions(const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs) | IBAMR::INSHierarchyIntegrator | |
| registerPostprocessIntegrateHierarchyCallback(PostprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerPreprocessIntegrateHierarchyCallback(PreprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerPressureInitialConditions(SAMRAI::tbox::Pointer< IBTK::CartGridFunction > P_init) | IBAMR::INSHierarchyIntegrator | |
| registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
| registerRegridHierarchyCallback(RegridHierarchyCallbackFcnPtr, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
| registerVariable(int ¤t_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< CartGridFunction > init_fcn=nullptr, const bool register_for_restart=true) | IBTK::HierarchyIntegrator | |
| registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(nullptr), const bool register_for_restart=true) | IBTK::HierarchyIntegrator | |
| registerVelocityDivergenceFunction(SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_fcn) | IBAMR::INSHierarchyIntegrator | |
| registerVelocityInitialConditions(SAMRAI::tbox::Pointer< IBTK::CartGridFunction > U_init) | IBAMR::INSHierarchyIntegrator | |
| registerVisItDataWriter(SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer) | IBTK::HierarchyIntegrator | |
| regriddingHierarchy() const | IBTK::HierarchyIntegrator | inlineprotected |
| regridHierarchy() | IBTK::HierarchyIntegrator | virtual |
| regridHierarchyBeginSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| RegridHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
| regridHierarchyEndSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| regridProjection(const bool initial_time) override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| reinitializeOperatorsAndSolvers(double current_time, double new_time) | IBAMR::INSCollocatedHierarchyIntegrator | private |
| resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< DIM > > level) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy< NDIM >::resetHierarchyConfiguration(const tbox::Pointer< hier::BasePatchHierarchy< DIM > > hierarchy, const int coarsest_level, const int finest_level)=0 | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | pure virtual |
| resetHierarchyConfigurationSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| resetIntegratorToPreadvanceState() | IBTK::HierarchyIntegrator | |
| resetIntegratorToPreadvanceStateSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
| resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< DIM > > level, const double new_time, const bool can_be_refined) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| resetTimeDependentHierarchyData(double new_time) | IBTK::HierarchyIntegrator | |
| resetTimeDependentHierarchyDataSpecialized(double new_time) | IBTK::HierarchyIntegrator | protectedvirtual |
| Serializable() | SAMRAI::tbox::Serializable | |
| setConvectiveDifferencingType(ConvectiveDifferencingType difference_form) | IBAMR::INSHierarchyIntegrator | |
| setConvectiveOperator(SAMRAI::tbox::Pointer< ConvectiveOperator > convective_op) | IBAMR::INSHierarchyIntegrator | |
| setConvectiveOperatorNeedsInit() | IBAMR::INSHierarchyIntegrator | |
| setConvectiveOperatorType(const std::string &op_type) | IBAMR::INSHierarchyIntegrator | |
| setConvectiveTimeSteppingType(TimeSteppingType convective_time_stepping_type) | IBAMR::INSHierarchyIntegrator | |
| setCreepingFlow(bool creeping_flow) | IBAMR::INSHierarchyIntegrator | |
| setInitialConvectiveTimeSteppingType(TimeSteppingType init_convective_time_stepping_type) const | IBAMR::INSHierarchyIntegrator | |
| setPressureSubdomainSolver(SAMRAI::tbox::Pointer< IBTK::PoissonSolver > pressure_solver) | IBAMR::INSHierarchyIntegrator | |
| setPressureSubdomainSolverNeedsInit() | IBAMR::INSHierarchyIntegrator | |
| setStokesSpecifications(StokesSpecifications problem_coefs) | IBAMR::INSHierarchyIntegrator | |
| setupPlotData() | IBTK::HierarchyIntegrator | |
| setupPlotDataSpecialized() override | IBAMR::INSCollocatedHierarchyIntegrator | protectedvirtual |
| setupTagBuffer(SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) | IBTK::HierarchyIntegrator | protected |
| setVelocitySubdomainSolver(SAMRAI::tbox::Pointer< IBTK::PoissonSolver > velocity_solver) | IBAMR::INSHierarchyIntegrator | |
| setVelocitySubdomainSolverNeedsInit() | IBAMR::INSHierarchyIntegrator | |
| setViscousTimeSteppingType(TimeSteppingType viscous_time_stepping_type) | IBAMR::INSHierarchyIntegrator | |
| skipCycle(double current_time, double new_time, int cycle_num=0) | IBTK::HierarchyIntegrator | |
| StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | |
| stepsRemaining() const | IBTK::HierarchyIntegrator | |
| SYNCH_CURRENT_DATA_ALG | IBTK::HierarchyIntegrator | protectedstatic |
| SYNCH_NEW_DATA_ALG | IBTK::HierarchyIntegrator | protectedstatic |
| synchronizeHierarchyData(VariableContextType ctx_type) | IBTK::HierarchyIntegrator | |
| synchronizeHierarchyDataSpecialized(VariableContextType ctx_type) | IBTK::HierarchyIntegrator | protectedvirtual |
| tagCellsByVorticityMagnitude(const int level_number, const int Omega_idx, const int tag_idx) | IBAMR::INSHierarchyIntegrator | protected |
| updateCurrentCFLNumber(const int data_idx, const double dt) | IBAMR::INSHierarchyIntegrator | protectedvirtual |
| updateWorkloadEstimates() | IBTK::HierarchyIntegrator | |
| ~DescribedClass() | SAMRAI::tbox::DescribedClass | virtual |
| ~HierarchyIntegrator() | IBTK::HierarchyIntegrator | |
| ~INSCollocatedHierarchyIntegrator() | IBAMR::INSCollocatedHierarchyIntegrator | |
| ~INSHierarchyIntegrator() | IBAMR::INSHierarchyIntegrator | |
| ~Serializable() | SAMRAI::tbox::Serializable | virtual |
| ~StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
