IBAMR
An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method
IBTK::HierarchyIntegrator Member List

This is the complete list of members for IBTK::HierarchyIntegrator, including all inherited members.

addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx)IBTK::HierarchyIntegratorprotectedvirtual
advanceHierarchy(double dt)IBTK::HierarchyIntegratorvirtual
advanceLevel(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
allocatePatchData(int data_idx, double data_time, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) constIBTK::HierarchyIntegrator
applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) overrideIBTK::HierarchyIntegratorvirtual
ApplyGradientDetectorCallbackFcnPtr typedefIBTK::HierarchyIntegrator
applyGradientDetectorSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too)IBTK::HierarchyIntegratorprotectedvirtual
applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
atRegridPoint() constIBTK::HierarchyIntegrator
atRegridPointSpecialized() constIBTK::HierarchyIntegratorprotectedvirtual
atRegridTimeStep() constIBTK::HierarchyIntegratorinlineprotected
buildHierarchyMathOps(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy)IBTK::HierarchyIntegratorprotected
coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
d_apply_gradient_detector_callback_ctxs (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_apply_gradient_detector_callbacks (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_bdry_extrap_type (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_child_integrators (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_copy_scratch_to_current_fast (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_copy_scratch_to_current_slow (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_current_contextIBTK::HierarchyIntegratorprotected
d_current_cycle_num (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_current_data (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_current_dt (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_current_num_cycles (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_dt_growth_factor (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_dt_init (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_dt_max (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_dt_min (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_dt_previous (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_enable_logging (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_enable_logging_solver_iterations (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_end_time (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_fill_after_regrid_bc_idxsIBTK::HierarchyIntegratorprotected
d_fill_after_regrid_phys_bdry_bc_op (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_fill_after_regrid_prolong_alg (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_gridding_alg (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_hier_math_ops (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_hierarchy (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_hierarchy_is_initialized (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_integrate_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_integrate_hierarchy_callbacks (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_integrator_step (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_integrator_time (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_load_balancer (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_manage_hier_math_ops (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_max_integrator_steps (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_may_need_to_reset_hierarchy_configuration (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_new_context (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_new_data (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_num_cycles (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_object_name (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_parent_integrator (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_plot_context (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_plot_data (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_postprocess_integrate_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_postprocess_integrate_hierarchy_callbacks (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_preprocess_integrate_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_preprocess_integrate_hierarchy_callbacksIBTK::HierarchyIntegratorprotected
d_registered_for_restart (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_regrid_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_regrid_hierarchy_callbacks (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_regrid_interval (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_regrid_mode (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_scratch_context (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_scratch_data (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_scratch_variables (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_start_time (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_state_var_init_fcns (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_state_variables (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_tag_buffer (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_visit_writer (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
d_workload_idxIBTK::HierarchyIntegratorprotected
d_workload_var (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotected
deallocatePatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) constIBTK::HierarchyIntegrator
executeApplyGradientDetectorCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too)IBTK::HierarchyIntegratorprotectedvirtual
executeIntegrateHierarchyCallbackFcns(double current_time, double new_time, int cycle_num)IBTK::HierarchyIntegratorprotectedvirtual
executePostprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles)IBTK::HierarchyIntegratorprotectedvirtual
executePreprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, int num_cycles)IBTK::HierarchyIntegratorprotectedvirtual
executeRegridHierarchyCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time)IBTK::HierarchyIntegratorprotectedvirtual
getCoarsenAlgorithm(const std::string &name) constIBTK::HierarchyIntegratorprotected
getCoarsenSchedules(const std::string &name) constIBTK::HierarchyIntegratorprotected
getContext(VariableContextType ctx_type) constIBTK::HierarchyIntegrator
getCurrentContext() constIBTK::HierarchyIntegrator
getCurrentCycleNumber() constIBTK::HierarchyIntegratorvirtual
getCurrentTimeStepSize() constIBTK::HierarchyIntegratorvirtual
getEndTime() constIBTK::HierarchyIntegrator
getGhostfillRefineAlgorithm(const std::string &name) constIBTK::HierarchyIntegratorprotected
getGhostfillRefineSchedules(const std::string &name) constIBTK::HierarchyIntegratorprotected
getGriddingAlgorithm() constIBTK::HierarchyIntegrator
getHierarchyMathOps() constIBTK::HierarchyIntegrator
getIntegratorStep() constIBTK::HierarchyIntegrator
getIntegratorTime() constIBTK::HierarchyIntegrator
getLevelDt(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
getMaximumTimeStepSize()IBTK::HierarchyIntegrator
getMaximumTimeStepSizeSpecialized()IBTK::HierarchyIntegratorprotectedvirtual
getMaxIntegratorSteps() constIBTK::HierarchyIntegrator
getMinimumTimeStepSize()IBTK::HierarchyIntegrator
getMinimumTimeStepSizeSpecialized()IBTK::HierarchyIntegratorprotectedvirtual
getName() constIBTK::HierarchyIntegrator
getNewContext() constIBTK::HierarchyIntegrator
getNumberOfCycles() constIBTK::HierarchyIntegratorvirtual
getPatchHierarchy() constIBTK::HierarchyIntegrator
getPlotContext() constIBTK::HierarchyIntegrator
getProlongRefineAlgorithm(const std::string &name) constIBTK::HierarchyIntegratorprotected
getProlongRefineSchedules(const std::string &name) constIBTK::HierarchyIntegratorprotected
getScratchContext() constIBTK::HierarchyIntegrator
getStartTime() constIBTK::HierarchyIntegrator
getVisItDataWriter() constIBTK::HierarchyIntegrator
getWorkloadDataIndex() constIBTK::HierarchyIntegrator
HierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart)IBTK::HierarchyIntegrator
initializeCompositeHierarchyData(double init_data_time, bool initial_time)IBTK::HierarchyIntegrator
initializeCompositeHierarchyDataSpecialized(double init_data_time, bool initial_time)IBTK::HierarchyIntegratorprotectedvirtual
initializeHierarchyIntegrator(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg)=0IBTK::HierarchyIntegratorpure virtual
initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(NULL), bool allocate_data=true) overrideIBTK::HierarchyIntegratorvirtual
initializeLevelDataSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data)IBTK::HierarchyIntegratorprotectedvirtual
initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg)IBTK::HierarchyIntegratorvirtual
integrateHierarchy(double current_time, double new_time, int cycle_num=0)IBTK::HierarchyIntegrator
IntegrateHierarchyCallbackFcnPtr typedefIBTK::HierarchyIntegrator
integrateHierarchySpecialized(double current_time, double new_time, int cycle_num=0)=0IBTK::HierarchyIntegratorprotectedpure virtual
isAllocatedPatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) constIBTK::HierarchyIntegrator
postprocessIntegrateHierarchy(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles=1)IBTK::HierarchyIntegratorvirtual
PostprocessIntegrateHierarchyCallbackFcnPtr typedefIBTK::HierarchyIntegrator
preprocessIntegrateHierarchy(double current_time, double new_time, int num_cycles=1)IBTK::HierarchyIntegratorvirtual
PreprocessIntegrateHierarchyCallbackFcnPtr typedefIBTK::HierarchyIntegrator
putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) overrideIBTK::HierarchyIntegratorvirtual
putToDatabaseSpecialized(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db)IBTK::HierarchyIntegratorprotectedvirtual
registerApplyGradientDetectorCallback(ApplyGradientDetectorCallbackFcnPtr callback, void *ctx=nullptr)IBTK::HierarchyIntegrator
registerChildHierarchyIntegrator(HierarchyIntegrator *child_integrator)IBTK::HierarchyIntegratorprotected
registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr)IBTK::HierarchyIntegratorprotected
registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr)IBTK::HierarchyIntegratorprotected
registerIntegrateHierarchyCallback(IntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr)IBTK::HierarchyIntegrator
registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer)IBTK::HierarchyIntegratorvirtual
registerParentHierarchyIntegrator(HierarchyIntegrator *parent_integrator)IBTK::HierarchyIntegratorprotected
registerPostprocessIntegrateHierarchyCallback(PostprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr)IBTK::HierarchyIntegrator
registerPreprocessIntegrateHierarchyCallback(PreprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr)IBTK::HierarchyIntegrator
registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr)IBTK::HierarchyIntegratorprotected
registerRegridHierarchyCallback(RegridHierarchyCallbackFcnPtr, void *ctx=nullptr)IBTK::HierarchyIntegrator
registerVariable(int &current_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< CartGridFunction > init_fcn=SAMRAI::tbox::Pointer< CartGridFunction >(NULL), const bool register_for_restart=true)IBTK::HierarchyIntegrator
registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(NULL), const bool register_for_restart=true)IBTK::HierarchyIntegrator
registerVisItDataWriter(SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer)IBTK::HierarchyIntegrator
regriddingHierarchy() constIBTK::HierarchyIntegratorinlineprotected
regridHierarchy()IBTK::HierarchyIntegratorvirtual
regridHierarchyBeginSpecialized()IBTK::HierarchyIntegratorprotectedvirtual
RegridHierarchyCallbackFcnPtr typedefIBTK::HierarchyIntegrator
regridHierarchyEndSpecialized()IBTK::HierarchyIntegratorprotectedvirtual
resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) overrideIBTK::HierarchyIntegratorvirtual
resetHierarchyConfigurationSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level)IBTK::HierarchyIntegratorprotectedvirtual
resetIntegratorToPreadvanceState()IBTK::HierarchyIntegrator
resetIntegratorToPreadvanceStateSpecialized()IBTK::HierarchyIntegratorprotectedvirtual
resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined)SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual
resetTimeDependentHierarchyData(double new_time)IBTK::HierarchyIntegrator
resetTimeDependentHierarchyDataSpecialized(double new_time)IBTK::HierarchyIntegratorprotectedvirtual
Serializable()SAMRAI::tbox::Serializable
setupPlotData()IBTK::HierarchyIntegrator
setupPlotDataSpecialized()IBTK::HierarchyIntegratorprotectedvirtual
setupTagBuffer(SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg)IBTK::HierarchyIntegratorprotected
skipCycle(double current_time, double new_time, int cycle_num=0)IBTK::HierarchyIntegrator
StandardTagAndInitStrategy()SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >
stepsRemaining() constIBTK::HierarchyIntegrator
SYNCH_CURRENT_DATA_ALGIBTK::HierarchyIntegratorprotectedstatic
SYNCH_NEW_DATA_ALG (defined in IBTK::HierarchyIntegrator)IBTK::HierarchyIntegratorprotectedstatic
synchronizeHierarchyData(VariableContextType ctx_type)IBTK::HierarchyIntegrator
synchronizeHierarchyDataSpecialized(VariableContextType ctx_type)IBTK::HierarchyIntegratorprotectedvirtual
updateWorkloadEstimates()IBTK::HierarchyIntegrator
~HierarchyIntegrator()IBTK::HierarchyIntegrator
~Serializable()SAMRAI::tbox::Serializablevirtual
~StandardTagAndInitStrategy()SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >virtual