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IBAMR
An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method
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This is the complete list of members for IBTK::LDataManager, including all inherited members.
| activateLagrangianStructures(const std::vector< int > &structure_ids, int level_number) | IBTK::LDataManager | |
| addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx, const int coarsest_ln=invalid_level_number, const int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| advanceLevel(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBTK::LDataManager | virtual |
| applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| beginDataRedistribution(int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| computeLagrangianStructureBoundingBox(int structure_id, int level_number) | IBTK::LDataManager | |
| computeLagrangianStructureCenterOfMass(int structure_id, int level_number) | IBTK::LDataManager | |
| createLData(const std::string &quantity_name, int level_number, unsigned int depth=1, bool maintain_data=false) | IBTK::LDataManager | |
| displaceLagrangianStructure(const Vector &dX, int structure_id, int level_number) | IBTK::LDataManager | |
| endDataRedistribution(int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| freeAllManagers() | IBTK::LDataManager | static |
| freeLInitStrategy() | IBTK::LDataManager | |
| getAO(int level_number) | IBTK::LDataManager | |
| getDefaultInterpKernelFunction() const | IBTK::LDataManager | inline |
| getDefaultSpreadKernelFunction() const | IBTK::LDataManager | inline |
| getGhostCellWidth() const | IBTK::LDataManager | inline |
| getGlobalNodeOffset(int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureID(int lagrangian_index, int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureID(const std::string &structure_name, int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureIDs(int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureIndexRange(int structure_id, int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureIsActivated(int structure_id, int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureName(int structure_id, int level_number) const | IBTK::LDataManager | inline |
| getLagrangianStructureNames(int level_number) const | IBTK::LDataManager | inline |
| getLData(const std::string &quantity_name, int level_number) const | IBTK::LDataManager | inline |
| getLevelDt(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| getLMesh(int level_number) const | IBTK::LDataManager | inline |
| getLNodePatchDescriptorIndex() const | IBTK::LDataManager | inline |
| getManager(const std::string &name, const std::string &default_interp_kernel_fcn, const std::string &default_spread_kernel_fcn, bool error_if_points_leave_domain=false, const SAMRAI::hier::IntVector< NDIM > &min_ghost_width=SAMRAI::hier::IntVector< NDIM >(0), bool register_for_restart=true) | IBTK::LDataManager | static |
| getNodeCountPatchDescriptorIndex() const | IBTK::LDataManager | inline |
| getNumberOfGhostNodes(int level_number) const | IBTK::LDataManager | inline |
| getNumberOfLocalNodes(int level_number) const | IBTK::LDataManager | inline |
| getNumberOfNodes(int level_number) const | IBTK::LDataManager | inline |
| getPatchHierarchy() const | IBTK::LDataManager | |
| getPatchLevels() const | IBTK::LDataManager | |
| getWorkloadPatchDescriptorIndex() const | IBTK::LDataManager | inline |
| inactivateLagrangianStructures(const std::vector< int > &structure_ids, int level_number) | IBTK::LDataManager | |
| INIT_POSN_DATA_NAME | IBTK::LDataManager | static |
| initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(nullptr), bool allocate_data=true) override | IBTK::LDataManager | virtual |
| interp(int f_data_idx, SAMRAI::tbox::Pointer< LData > F_data, SAMRAI::tbox::Pointer< LData > X_data, int level_num, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &f_synch_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >(), const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_ghost_fill_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0) | IBTK::LDataManager | |
| interp(int f_data_idx, SAMRAI::tbox::Pointer< LData > F_data, SAMRAI::tbox::Pointer< LData > X_data, const std::string &interp_kernel_fcn, int level_num, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &f_synch_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >(), const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_ghost_fill_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0) | IBTK::LDataManager | |
| interp(int f_data_idx, std::vector< SAMRAI::tbox::Pointer< LData > > &F_data, std::vector< SAMRAI::tbox::Pointer< LData > > &X_data, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &f_synch_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >(), const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_ghost_fill_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| interp(int f_data_idx, std::vector< SAMRAI::tbox::Pointer< LData > > &F_data, std::vector< SAMRAI::tbox::Pointer< LData > > &X_data, const std::string &interp_kernel_fcn, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &f_synch_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >(), const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_ghost_fill_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| LDataManager(std::string object_name, std::string default_interp_kernel_fcn, std::string default_spread_kernel_fcn, bool error_if_points_leave_domain, SAMRAI::hier::IntVector< NDIM > ghost_width, bool register_for_restart=true) | IBTK::LDataManager | protected |
| levelContainsLagrangianData(int level_number) const | IBTK::LDataManager | inline |
| mapLagrangianToPETSc(std::vector< int > &inds, int level_number) const | IBTK::LDataManager | |
| mapPETScToLagrangian(std::vector< int > &inds, int level_number) const | IBTK::LDataManager | |
| POSN_DATA_NAME | IBTK::LDataManager | static |
| putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBTK::LDataManager | virtual |
| registerLInitStrategy(SAMRAI::tbox::Pointer< LInitStrategy > lag_init) | IBTK::LDataManager | |
| registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer, int workload_data_idx) | IBTK::LDataManager | |
| registerLSiloDataWriter(SAMRAI::tbox::Pointer< LSiloDataWriter > silo_writer) | IBTK::LDataManager | |
| registerUserDefinedLData(const std::string &data_name, int depth) | IBTK::LDataManager | |
| registerVisItDataWriter(SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer) | IBTK::LDataManager | |
| reinitLagrangianStructure(const Point &X_center, int structure_id, int level_number) | IBTK::LDataManager | |
| resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_ln, int finest_ln) override | IBTK::LDataManager | virtual |
| resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| scatterLagrangianToPETSc(Vec &lagrangian_vec, Vec &petsc_vec, int level_number) const | IBTK::LDataManager | |
| scatterPETScToLagrangian(Vec &petsc_vec, Vec &lagrangian_vec, int level_number) const | IBTK::LDataManager | |
| scatterToAll(Vec ¶llel_vec, Vec &sequential_vec) const | IBTK::LDataManager | |
| scatterToZero(Vec ¶llel_vec, Vec &sequential_vec) const | IBTK::LDataManager | |
| Serializable() | SAMRAI::tbox::Serializable | |
| setPatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) | IBTK::LDataManager | |
| setPatchLevels(int coarsest_ln, int finest_ln) | IBTK::LDataManager | |
| spread(int f_data_idx, SAMRAI::tbox::Pointer< LData > F_data, SAMRAI::tbox::Pointer< LData > X_data, SAMRAI::tbox::Pointer< LData > ds_data, RobinPhysBdryPatchStrategy *f_phys_bdry_op, int level_num, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true, bool ds_data_ghost_node_update=true) | IBTK::LDataManager | |
| spread(int f_data_idx, SAMRAI::tbox::Pointer< LData > F_data, SAMRAI::tbox::Pointer< LData > X_data, SAMRAI::tbox::Pointer< LData > ds_data, const std::string &spread_kernel_fcn, RobinPhysBdryPatchStrategy *f_phys_bdry_op, int level_num, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true, bool ds_data_ghost_node_update=true) | IBTK::LDataManager | |
| spread(int f_data_idx, std::vector< SAMRAI::tbox::Pointer< LData > > &F_data, std::vector< SAMRAI::tbox::Pointer< LData > > &X_data, std::vector< SAMRAI::tbox::Pointer< LData > > &ds_data, RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true, bool ds_data_ghost_node_update=true, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| spread(int f_data_idx, std::vector< SAMRAI::tbox::Pointer< LData > > &F_data, std::vector< SAMRAI::tbox::Pointer< LData > > &X_data, std::vector< SAMRAI::tbox::Pointer< LData > > &ds_data, const std::string &spread_kernel_fcn, RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true, bool ds_data_ghost_node_update=true, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| spread(int f_data_idx, SAMRAI::tbox::Pointer< LData > F_data, SAMRAI::tbox::Pointer< LData > X_data, RobinPhysBdryPatchStrategy *f_phys_bdry_op, int level_num, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true) | IBTK::LDataManager | |
| spread(int f_data_idx, SAMRAI::tbox::Pointer< LData > F_data, SAMRAI::tbox::Pointer< LData > X_data, const std::string &spread_kernel_fcn, RobinPhysBdryPatchStrategy *f_phys_bdry_op, int level_num, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true) | IBTK::LDataManager | |
| spread(int f_data_idx, std::vector< SAMRAI::tbox::Pointer< LData > > &F_data, std::vector< SAMRAI::tbox::Pointer< LData > > &X_data, RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| spread(int f_data_idx, std::vector< SAMRAI::tbox::Pointer< LData > > &F_data, std::vector< SAMRAI::tbox::Pointer< LData > > &X_data, const std::string &spread_kernel_fcn, RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds=std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > >(), double fill_data_time=0.0, bool F_data_ghost_node_update=true, bool X_data_ghost_node_update=true, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | |
| updateNodeCountData(int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) | IBTK::LDataManager | |
| VEL_DATA_NAME | IBTK::LDataManager | static |
| zeroInactivatedComponents(SAMRAI::tbox::Pointer< LData > lag_data, int level_number) const | IBTK::LDataManager | |
| ~LDataManager() | IBTK::LDataManager | protected |
| ~Serializable() | SAMRAI::tbox::Serializable | virtual |
| ~StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
1.9.1