Class IBFEPostProcessor is a generic interface for specifying the implementation details of a particular post processing algorithm for the IB/FE scheme.

#include <ibamr/IBFEPostProcessor.h>

Inheritance diagram for IBAMR::IBFEPostProcessor:

[legend]

Public Member Functions
	IBFEPostProcessor (std::string name, IBTK::FEDataManager *fe_data_manager)

virtual	~IBFEPostProcessor ()=default

virtual void	registerScalarVariable (const std::string &name, libMesh::FEFamily fe_family, libMesh::Order fe_order, IBTK::ScalarMeshFcnPtr fcn, const std::vector< IBTK::SystemData > &system_data=std::vector< IBTK::SystemData >(), void *var_fcn_ctx=nullptr)

virtual void	registerVectorVariable (const std::string &var_name, libMesh::FEFamily var_fe_family, libMesh::Order var_fe_order, IBTK::VectorMeshFcnPtr var_fcn, const std::vector< IBTK::SystemData > &system_data=std::vector< IBTK::SystemData >(), void *var_fcn_ctx=nullptr, unsigned int var_dim=NDIM)

virtual void	registerTensorVariable (const std::string &var_name, libMesh::FEFamily var_fe_family, libMesh::Order var_fe_order, IBTK::TensorMeshFcnPtr var_fcn, const std::vector< IBTK::SystemData > &system_data=std::vector< IBTK::SystemData >(), void *var_fcn_ctx=nullptr, unsigned int var_dim=NDIM)

virtual void	registerInterpolatedScalarEulerianVariable (const std::string &var_name, libMesh::FEFamily var_fe_family, libMesh::Order var_fe_order, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > var, SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx, const IBTK::HierarchyGhostCellInterpolation::InterpolationTransactionComponent &ghost_fill_transaction)

virtual void	registerInterpolatedScalarEulerianVariable (const std::string &var_name, libMesh::FEFamily var_fe_family, libMesh::Order var_fe_order, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > var, SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx, const IBTK::HierarchyGhostCellInterpolation::InterpolationTransactionComponent &ghost_fill_transaction, const IBTK::FEDataManager::InterpSpec &interp_spec)

virtual void	initializeFEData ()

virtual void	postProcessData (double data_time)

Static Public Member Functions
static void	FF_fcn (libMesh::TensorValue< double > &FF_out, const libMesh::TensorValue< double > &FF_in, const libMesh::Point &, const libMesh::Point &, libMesh::Elem , const std::vector< const std::vector< double > > &, const std::vector< const std::vector< libMesh::VectorValue< double > > * > &, double, void *)
	Function for reconstructing the deformation gradient tensor FF = dX/ds. More...

static void	EE_fcn (libMesh::TensorValue< double > &EE, const libMesh::TensorValue< double > &FF, const libMesh::Point &, const libMesh::Point &, libMesh::Elem , const std::vector< const std::vector< double > > &, const std::vector< const std::vector< libMesh::VectorValue< double > > * > &, double, void *)
	Function for reconstructing the Green-Lagrangian strain tensor EE = 0.5*(CC - II), with CC = FF^T FF and FF = dX/ds. More...

static void	cauchy_stress_from_PK1_stress_fcn (libMesh::TensorValue< double > &sigma, const libMesh::TensorValue< double > &FF, const libMesh::Point &X, const libMesh::Point &s, libMesh::Elem elem, const std::vector< const std::vector< double > > &system_var_data, const std::vector< const std::vector< libMesh::VectorValue< double > > * > &system_grad_var_data, double data_time, void *ctx)
	Function for reconstructing the Cauchy stress from the PK1 stress, using the PK1 stress function data provided by the ctx argument. More...

static void	deformed_material_axis_fcn (libMesh::VectorValue< double > &f, const libMesh::TensorValue< double > &FF, const libMesh::Point &, const libMesh::Point &, libMesh::Elem , const std::vector< const std::vector< double > > &system_var_data, const std::vector< const std::vector< libMesh::VectorValue< double > > * > &, double, void *)
	Function for reconstructing a deformed material axis. A pointer to the system number must be passed as the ctx argument. More...

static void	deformed_normalized_material_axis_fcn (libMesh::VectorValue< double > &f, const libMesh::TensorValue< double > &FF, const libMesh::Point &, const libMesh::Point &, libMesh::Elem , const std::vector< const std::vector< double > > &system_var_data, const std::vector< const std::vector< libMesh::VectorValue< double > > * > &, double, void *)
	Function for reconstructing a deformed, normalized material axis. A pointer to the system number must be passed as the ctx argument. More...

static void	material_axis_stretch_fcn (double &lambda, const libMesh::TensorValue< double > &FF, const libMesh::Point &, const libMesh::Point &, libMesh::Elem , const std::vector< const std::vector< double > > &system_var_data, const std::vector< const std::vector< libMesh::VectorValue< double > > * > &, double, void *)
	Function for reconstructing the stretch in a material axis. A pointer to the system number must be passed as the ctx argument. More...

Protected Member Functions
virtual void	interpolateVariables (double data_time)

virtual void	reconstructVariables (double data_time)=0

Protected Attributes
const std::string	d_name

libMesh::MeshBase *	d_mesh

IBTK::FEDataManager *	d_fe_data_manager

bool	d_fe_data_initialized = false

std::vector< libMesh::System * >	d_scalar_var_systems

std::vector< IBTK::ScalarMeshFcnPtr >	d_scalar_var_fcns

std::vector< std::vector< IBTK::SystemData > >	d_scalar_var_system_data

std::vector< void * >	d_scalar_var_fcn_ctxs

std::vector< libMesh::System * >	d_vector_var_systems

std::vector< IBTK::VectorMeshFcnPtr >	d_vector_var_fcns

std::vector< std::vector< IBTK::SystemData > >	d_vector_var_system_data

std::vector< void * >	d_vector_var_fcn_ctxs

std::vector< unsigned int >	d_vector_var_dims

std::vector< libMesh::System * >	d_tensor_var_systems

std::vector< IBTK::TensorMeshFcnPtr >	d_tensor_var_fcns

std::vector< std::vector< IBTK::SystemData > >	d_tensor_var_system_data

std::vector< void * >	d_tensor_var_fcn_ctxs

std::vector< unsigned int >	d_tensor_var_dims

std::vector< libMesh::System * >	d_scalar_interp_var_systems

std::vector< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > >	d_scalar_interp_vars

std::vector< SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > >	d_scalar_interp_ctxs

std::vector< int >	d_scalar_interp_data_idxs

std::vector< int >	d_scalar_interp_scratch_idxs

std::vector< IBTK::HierarchyGhostCellInterpolation::InterpolationTransactionComponent >	d_scalar_interp_fill_transactions

std::vector< IBTK::FEDataManager::InterpSpec >	d_scalar_interp_specs

std::vector< libMesh::System * >	d_var_systems

Private Member Functions
	IBFEPostProcessor ()=delete
	Default constructor. More...

	IBFEPostProcessor (const IBFEPostProcessor &from)=delete
	Copy constructor. More...

IBFEPostProcessor &	operator= (const IBFEPostProcessor &that)=delete
	Assignment operator. More...

Constructor & Destructor Documentation

◆ IBFEPostProcessor() [1/3]

IBAMR::IBFEPostProcessor::IBFEPostProcessor	(	std::string	name,
		IBTK::FEDataManager *	fe_data_manager
	)

Constructor.

◆ ~IBFEPostProcessor()

virtual IBAMR::IBFEPostProcessor::~IBFEPostProcessor ( )

virtualdefault

Virtual destructor.

◆ IBFEPostProcessor() [2/3]

IBAMR::IBFEPostProcessor::IBFEPostProcessor ( )

privatedelete

Note: This constructor is not implemented and should not be used.

◆ IBFEPostProcessor() [3/3]

IBAMR::IBFEPostProcessor::IBFEPostProcessor ( const IBFEPostProcessor & from )

privatedelete

Note: This constructor is not implemented and should not be used.

Parameters

from	The value to copy to this object.

Member Function Documentation

◆ FF_fcn()

static void IBAMR::IBFEPostProcessor::FF_fcn	(	libMesh::TensorValue< double > &	FF_out,
		const libMesh::TensorValue< double > &	FF_in,
		const libMesh::Point &	,
		const libMesh::Point &	,
		libMesh::Elem *	,
		const std::vector< const std::vector< double > * > &	,
		const std::vector< const std::vector< libMesh::VectorValue< double > > * > &	,
		double	,
		void *
	)

inlinestatic

◆ EE_fcn()

static void IBAMR::IBFEPostProcessor::EE_fcn	(	libMesh::TensorValue< double > &	EE,
		const libMesh::TensorValue< double > &	FF,
		const libMesh::Point &	,
		const libMesh::Point &	,
		libMesh::Elem *	,
		const std::vector< const std::vector< double > * > &	,
		const std::vector< const std::vector< libMesh::VectorValue< double > > * > &	,
		double	,
		void *
	)

inlinestatic

◆ cauchy_stress_from_PK1_stress_fcn()

static void IBAMR::IBFEPostProcessor::cauchy_stress_from_PK1_stress_fcn	(	libMesh::TensorValue< double > &	sigma,
		const libMesh::TensorValue< double > &	FF,
		const libMesh::Point &	X,
		const libMesh::Point &	s,
		libMesh::Elem *	elem,
		const std::vector< const std::vector< double > * > &	system_var_data,
		const std::vector< const std::vector< libMesh::VectorValue< double > > * > &	system_grad_var_data,
		double	data_time,
		void *	ctx
	)

inlinestatic

◆ deformed_material_axis_fcn()

static void IBAMR::IBFEPostProcessor::deformed_material_axis_fcn	(	libMesh::VectorValue< double > &	f,
		const libMesh::TensorValue< double > &	FF,
		const libMesh::Point &	,
		const libMesh::Point &	,
		libMesh::Elem *	,
		const std::vector< const std::vector< double > * > &	system_var_data,
		const std::vector< const std::vector< libMesh::VectorValue< double > > * > &	,
		double	,
		void *
	)

inlinestatic

◆ deformed_normalized_material_axis_fcn()

static void IBAMR::IBFEPostProcessor::deformed_normalized_material_axis_fcn	(	libMesh::VectorValue< double > &	f,
		const libMesh::TensorValue< double > &	FF,
		const libMesh::Point &	,
		const libMesh::Point &	,
		libMesh::Elem *	,
		const std::vector< const std::vector< double > * > &	system_var_data,
		const std::vector< const std::vector< libMesh::VectorValue< double > > * > &	,
		double	,
		void *
	)

inlinestatic

◆ material_axis_stretch_fcn()

static void IBAMR::IBFEPostProcessor::material_axis_stretch_fcn	(	double &	lambda,
		const libMesh::TensorValue< double > &	FF,
		const libMesh::Point &	,
		const libMesh::Point &	,
		libMesh::Elem *	,
		const std::vector< const std::vector< double > * > &	system_var_data,
		const std::vector< const std::vector< libMesh::VectorValue< double > > * > &	,
		double	,
		void *
	)

inlinestatic

◆ registerScalarVariable()

virtual void IBAMR::IBFEPostProcessor::registerScalarVariable	(	const std::string &	name,
		libMesh::FEFamily	fe_family,
		libMesh::Order	fe_order,
		IBTK::ScalarMeshFcnPtr	fcn,
		const std::vector< IBTK::SystemData > &	system_data = `std::vector< IBTK::SystemData >()`,
		void *	var_fcn_ctx = `nullptr`
	)

virtual

Register a scalar-valued variable for reconstruction.

Reimplemented in IBAMR::IBFECentroidPostProcessor.

◆ registerVectorVariable()

virtual void IBAMR::IBFEPostProcessor::registerVectorVariable	(	const std::string &	var_name,
		libMesh::FEFamily	var_fe_family,
		libMesh::Order	var_fe_order,
		IBTK::VectorMeshFcnPtr	var_fcn,
		const std::vector< IBTK::SystemData > &	system_data = `std::vector< IBTK::SystemData >()`,
		void *	var_fcn_ctx = `nullptr`,
		unsigned int	var_dim = `NDIM`
	)

virtual

Register a vector-valued variable for reconstruction.

Reimplemented in IBAMR::IBFECentroidPostProcessor.

◆ registerTensorVariable()

virtual void IBAMR::IBFEPostProcessor::registerTensorVariable	(	const std::string &	var_name,
		libMesh::FEFamily	var_fe_family,
		libMesh::Order	var_fe_order,
		IBTK::TensorMeshFcnPtr	var_fcn,
		const std::vector< IBTK::SystemData > &	system_data = `std::vector< IBTK::SystemData >()`,
		void *	var_fcn_ctx = `nullptr`,
		unsigned int	var_dim = `NDIM`
	)

virtual

Register a tensor-valued variable for reconstruction.

Reimplemented in IBAMR::IBFECentroidPostProcessor.

◆ registerInterpolatedScalarEulerianVariable() [1/2]

virtual void IBAMR::IBFEPostProcessor::registerInterpolatedScalarEulerianVariable	(	const std::string &	var_name,
		libMesh::FEFamily	var_fe_family,
		libMesh::Order	var_fe_order,
		SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	var,
		SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	ctx,
		const IBTK::HierarchyGhostCellInterpolation::InterpolationTransactionComponent &	ghost_fill_transaction
	)

virtual

Register a scalar-valued Eulerian field for reconstruction on the FE mesh. The variable is interpolated using the default interp spec provided by the associated FEDataManager object.

◆ registerInterpolatedScalarEulerianVariable() [2/2]

virtual void IBAMR::IBFEPostProcessor::registerInterpolatedScalarEulerianVariable	(	const std::string &	var_name,
		libMesh::FEFamily	var_fe_family,
		libMesh::Order	var_fe_order,
		SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	var,
		SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	ctx,
		const IBTK::HierarchyGhostCellInterpolation::InterpolationTransactionComponent &	ghost_fill_transaction,
		const IBTK::FEDataManager::InterpSpec &	interp_spec
	)

virtual

Register a scalar-valued Eulerian field for reconstruction on the FE mesh. The variable is interpolated using the specified interp spec.

◆ initializeFEData()

virtual void IBAMR::IBFEPostProcessor::initializeFEData ( )

virtual

Initialize data used by the post processor.

◆ postProcessData()

virtual void IBAMR::IBFEPostProcessor::postProcessData ( double data_time )

virtual

Execute all reconstruction and interpolation operations.

◆ interpolateVariables()

virtual void IBAMR::IBFEPostProcessor::interpolateVariables ( double data_time )

protectedvirtual

Virtual function to interpolate Eulerian data to the mesh.

◆ reconstructVariables()

virtual void IBAMR::IBFEPostProcessor::reconstructVariables ( double data_time )

protectedpure virtual

Pure virtual function to reconstruct the data on the mesh.

Implemented in IBAMR::IBFECentroidPostProcessor.

◆ operator=()

IBFEPostProcessor& IBAMR::IBFEPostProcessor::operator= ( const IBFEPostProcessor & that )

privatedelete

Note: This operator is not implemented and should not be used.

Parameters

that	The value to assign to this object.

Returns: A reference to this object.

Member Data Documentation

◆ d_name

const std::string IBAMR::IBFEPostProcessor::d_name

protected

Name of the post processor object (used for internal variable context).

◆ d_mesh

libMesh::MeshBase* IBAMR::IBFEPostProcessor::d_mesh

protected

Mesh data.

◆ d_fe_data_manager

IBTK::FEDataManager* IBAMR::IBFEPostProcessor::d_fe_data_manager

protected

◆ d_fe_data_initialized

bool IBAMR::IBFEPostProcessor::d_fe_data_initialized = false

protected

◆ d_scalar_var_systems

std::vector<libMesh::System*> IBAMR::IBFEPostProcessor::d_scalar_var_systems

protected

Scalar-valued reconstruction data.

◆ d_scalar_var_fcns

std::vector<IBTK::ScalarMeshFcnPtr> IBAMR::IBFEPostProcessor::d_scalar_var_fcns

protected

◆ d_scalar_var_system_data

std::vector<std::vector<IBTK::SystemData> > IBAMR::IBFEPostProcessor::d_scalar_var_system_data

protected

◆ d_scalar_var_fcn_ctxs

std::vector<void*> IBAMR::IBFEPostProcessor::d_scalar_var_fcn_ctxs

protected

◆ d_vector_var_systems

std::vector<libMesh::System*> IBAMR::IBFEPostProcessor::d_vector_var_systems

protected

Vector-valued reconstruction data.

◆ d_vector_var_fcns

std::vector<IBTK::VectorMeshFcnPtr> IBAMR::IBFEPostProcessor::d_vector_var_fcns

protected

◆ d_vector_var_system_data

std::vector<std::vector<IBTK::SystemData> > IBAMR::IBFEPostProcessor::d_vector_var_system_data

protected

◆ d_vector_var_fcn_ctxs

std::vector<void*> IBAMR::IBFEPostProcessor::d_vector_var_fcn_ctxs

protected

◆ d_vector_var_dims

std::vector<unsigned int> IBAMR::IBFEPostProcessor::d_vector_var_dims

protected

◆ d_tensor_var_systems

std::vector<libMesh::System*> IBAMR::IBFEPostProcessor::d_tensor_var_systems

protected

Tensor-valued reconstruction data.

◆ d_tensor_var_fcns

std::vector<IBTK::TensorMeshFcnPtr> IBAMR::IBFEPostProcessor::d_tensor_var_fcns

protected

◆ d_tensor_var_system_data

std::vector<std::vector<IBTK::SystemData> > IBAMR::IBFEPostProcessor::d_tensor_var_system_data

protected

◆ d_tensor_var_fcn_ctxs

std::vector<void*> IBAMR::IBFEPostProcessor::d_tensor_var_fcn_ctxs

protected

◆ d_tensor_var_dims

std::vector<unsigned int> IBAMR::IBFEPostProcessor::d_tensor_var_dims

protected

◆ d_scalar_interp_var_systems

std::vector<libMesh::System*> IBAMR::IBFEPostProcessor::d_scalar_interp_var_systems

protected

Eulerian interpolation data.

◆ d_scalar_interp_vars

std::vector<SAMRAI::tbox::Pointer<SAMRAI::hier::Variable<NDIM> > > IBAMR::IBFEPostProcessor::d_scalar_interp_vars

protected

◆ d_scalar_interp_ctxs

std::vector<SAMRAI::tbox::Pointer<SAMRAI::hier::VariableContext> > IBAMR::IBFEPostProcessor::d_scalar_interp_ctxs

protected

◆ d_scalar_interp_data_idxs

std::vector<int> IBAMR::IBFEPostProcessor::d_scalar_interp_data_idxs

protected

◆ d_scalar_interp_scratch_idxs

std::vector<int> IBAMR::IBFEPostProcessor::d_scalar_interp_scratch_idxs

protected

◆ d_scalar_interp_fill_transactions

std::vector<IBTK::HierarchyGhostCellInterpolation::InterpolationTransactionComponent> IBAMR::IBFEPostProcessor::d_scalar_interp_fill_transactions

protected

◆ d_scalar_interp_specs

std::vector<IBTK::FEDataManager::InterpSpec> IBAMR::IBFEPostProcessor::d_scalar_interp_specs

protected

◆ d_var_systems

std::vector<libMesh::System*> IBAMR::IBFEPostProcessor::d_var_systems

protected

Collection of all systems managed by this object.

The documentation for this class was generated from the following file:

include/ibamr/IBFEPostProcessor.h

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Constructor & Destructor Documentation

◆ IBFEPostProcessor() [1/3]

◆ ~IBFEPostProcessor()

◆ IBFEPostProcessor() [2/3]

◆ IBFEPostProcessor() [3/3]

Member Function Documentation

◆ FF_fcn()

◆ EE_fcn()

◆ cauchy_stress_from_PK1_stress_fcn()

◆ deformed_material_axis_fcn()

◆ deformed_normalized_material_axis_fcn()

◆ material_axis_stretch_fcn()

◆ registerScalarVariable()

◆ registerVectorVariable()

◆ registerTensorVariable()

◆ registerInterpolatedScalarEulerianVariable() [1/2]

◆ registerInterpolatedScalarEulerianVariable() [2/2]

◆ initializeFEData()

◆ postProcessData()

◆ interpolateVariables()

◆ reconstructVariables()

◆ operator=()

Member Data Documentation

◆ d_name

◆ d_mesh

◆ d_fe_data_manager

◆ d_fe_data_initialized

◆ d_scalar_var_systems

◆ d_scalar_var_fcns

◆ d_scalar_var_system_data

◆ d_scalar_var_fcn_ctxs

◆ d_vector_var_systems

◆ d_vector_var_fcns

◆ d_vector_var_system_data

◆ d_vector_var_fcn_ctxs

◆ d_vector_var_dims

◆ d_tensor_var_systems

◆ d_tensor_var_fcns

◆ d_tensor_var_system_data

◆ d_tensor_var_fcn_ctxs

◆ d_tensor_var_dims

◆ d_scalar_interp_var_systems

◆ d_scalar_interp_vars

◆ d_scalar_interp_ctxs

◆ d_scalar_interp_data_idxs

◆ d_scalar_interp_scratch_idxs

◆ d_scalar_interp_fill_transactions

◆ d_scalar_interp_specs

◆ d_var_systems