Class LIndexSetData is a specialization of the templated class LSetData that is intended to be used with Lagrangian data objects that provide Lagrangian and PETSc indexing information. More...

#include <ibtk/LIndexSetData.h>

Inheritance diagram for IBTK::LIndexSetData< T >:

[legend]

Public Types
using	CellIterator = SAMRAI::pdat::CellIterator< NDIM >

using	SetIterator = SAMRAI::pdat::IndexIterator< NDIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > >

using	DataIterator = IBTK::LSetDataIterator< T >

typedef IndexIterator< DIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > >	Iterator

typedef ConstIndexIterator< DIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > >	ConstIterator

Public Member Functions
	LIndexSetData (SAMRAI::hier::Box< NDIM > box, SAMRAI::hier::IntVector< NDIM > ghosts)

virtual	~LIndexSetData ()=default

void	cacheLocalIndices (SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM >> patch, const SAMRAI::hier::IntVector< NDIM > &periodic_shift)
	Update the cached indexing data. More...

const std::vector< int > &	getLagrangianIndices () const

const std::vector< int > &	getInteriorLagrangianIndices () const

const std::vector< int > &	getGhostLagrangianIndices () const

const std::vector< int > &	getGlobalPETScIndices () const

const std::vector< int > &	getInteriorGlobalPETScIndices () const

const std::vector< int > &	getGhostGlobalPETScIndices () const

const std::vector< int > &	getLocalPETScIndices () const

const std::vector< int > &	getInteriorLocalPETScIndices () const

const std::vector< int > &	getGhostLocalPETScIndices () const

const std::vector< double > &	getPeriodicShifts () const

const std::vector< double > &	getInteriorPeriodicShifts () const

const std::vector< double > &	getGhostPeriodicShifts () const

DataIterator	data_begin (const SAMRAI::hier::Box< NDIM > &box)

DataIterator	data_end ()

virtual void	copy (const hier::PatchData< DIM > &src)

virtual void	copy (const hier::PatchData< DIM > &src, const hier::BoxOverlap< DIM > &overlap)

virtual void	copy2 (hier::PatchData< DIM > &dst) const

virtual void	copy2 (hier::PatchData< DIM > &dst, const hier::BoxOverlap< DIM > &overlap) const

virtual bool	canEstimateStreamSizeFromBox () const

virtual int	getDataStreamSize (const hier::BoxOverlap< DIM > &overlap) const

virtual void	packStream (tbox::AbstractStream &stream, const hier::BoxOverlap< DIM > &overlap) const

virtual void	unpackStream (tbox::AbstractStream &stream, const hier::BoxOverlap< DIM > &overlap)

void	appendItem (const hier::Index< DIM > &index, const LSet< T > &item)

void	appendItemPointer (const hier::Index< DIM > &index, LSet< T > *item)

void	addItem (const hier::Index< DIM > &index, const LSet< T > &item)

void	addItemPointer (const hier::Index< DIM > &index, LSet< T > *item)

void	replaceAddItem (const hier::Index< DIM > &index, const LSet< T > &item)

void	replaceAddItemPointer (const hier::Index< DIM > &index, LSet< T > *item)

void	replaceAppendItem (const hier::Index< DIM > &index, const LSet< T > &item)

void	replaceAppendItemPointer (const hier::Index< DIM > &index, LSet< T > *item)

void	removeItem (const hier::Index< DIM > &index)

int	getNumberOfItems () const

void	removeInsideBox (const hier::Box< DIM > &box)

void	removeOutsideBox (const hier::Box< DIM > &box)

void	removeGhostItems ()

void	removeAllItems ()

bool	isElement (const hier::Index< DIM > &index) const

LSet< T > *	getItem (const hier::Index< DIM > &index) const

virtual void	getSpecializedFromDatabase (tbox::Pointer< tbox::Database > database)

virtual void	putSpecializedToDatabase (tbox::Pointer< tbox::Database > database)

const Box< DIM > &	getBox () const

const Box< DIM > &	getGhostBox () const

const IntVector< DIM > &	getGhostCellWidth () const

void	setTime (const double timestamp)

double	getTime () const

virtual void	getFromDatabase (tbox::Pointer< tbox::Database > database)

virtual void	putToDatabase (tbox::Pointer< tbox::Database > database)

Protected Member Functions
void	setGhostBox (const Box< DIM > &ghost_box)

Private Member Functions
	LIndexSetData ()=delete
	Default constructor. More...

	LIndexSetData (const LIndexSetData< T > &from)=delete
	Copy constructor. More...

LIndexSetData &	operator= (const LIndexSetData< T > &that)=delete
	Assignment operator. More...

void	removeItem (const int offset)

bool	isElement (int offset) const

void	addItemToList (const hier::Index< DIM > &index, const int offset, LSet< T > &item)

void	appendItemToList (const hier::Index< DIM > &index, const int offset, LSet< T > &item)

void	removeNodeFromList (IndexDataNode< DIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > > *node)

Private Attributes
std::vector< int >	d_lag_indices

std::vector< int >	d_interior_lag_indices

std::vector< int >	d_ghost_lag_indices

std::vector< int >	d_global_petsc_indices

std::vector< int >	d_interior_global_petsc_indices

std::vector< int >	d_ghost_global_petsc_indices

std::vector< int >	d_local_petsc_indices

std::vector< int >	d_interior_local_petsc_indices

std::vector< int >	d_ghost_local_petsc_indices

std::vector< double >	d_periodic_shifts

std::vector< double >	d_interior_periodic_shifts

std::vector< double >	d_ghost_periodic_shifts

std::vector< IndexDataNode< DIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > > * >	d_data

IndexDataNode< DIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > > *	d_list_head

IndexDataNode< DIM, LSet< T >, SAMRAI::pdat::CellGeometry< NDIM > > *	d_list_tail

int	d_number_items

Box< DIM >	d_box

Box< DIM >	d_ghost_box

IntVector< DIM >	d_ghosts

double	d_timestamp

Detailed Description

template<class T>
class IBTK::LIndexSetData< T >

See also: LSetData; SAMRAI::pdat::IndexData

Member Typedef Documentation

◆ CellIterator

template<class T >

using IBTK::LSetData< T >::CellIterator = SAMRAI::pdat::CellIterator<NDIM>

inherited

This iterator iterates over the elements of a cell centered box geometry.

◆ SetIterator

template<class T >

using IBTK::LSetData< T >::SetIterator = SAMRAI::pdat::IndexIterator<NDIM, LSet<T>, SAMRAI::pdat::CellGeometry<NDIM> >

inherited

This iterator iterates over the LSet elements within the IndexData patch data object.

◆ DataIterator

template<class T >

using IBTK::LSetData< T >::DataIterator = IBTK::LSetDataIterator<T>

inherited

This iterator iterates over the Lagrangian elements located within a cell centered box geometry.

◆ Iterator

typedef IndexIterator<DIM,LSet< T > ,SAMRAI::pdat::CellGeometry< NDIM > > SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::Iterator

inherited

Define the iterator.

◆ ConstIterator

typedef ConstIndexIterator<DIM,LSet< T > ,SAMRAI::pdat::CellGeometry< NDIM > > SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::ConstIterator

inherited

Constructor & Destructor Documentation

◆ LIndexSetData() [1/3]

template<class T >

IBTK::LIndexSetData< T >::LIndexSetData	(	SAMRAI::hier::Box< NDIM >	box,
		SAMRAI::hier::IntVector< NDIM >	ghosts
	)

The constructor for an LIndexSetData object. The box describes the interior of the index space and the ghosts vector describes the ghost nodes in each coordinate direction.

◆ ~LIndexSetData()

template<class T >

virtual IBTK::LIndexSetData< T >::~LIndexSetData ( )

virtualdefault

The virtual destructor for an LIndexSetData object.

◆ LIndexSetData() [2/3]

template<class T >

IBTK::LIndexSetData< T >::LIndexSetData ( )

privatedelete

Note: This constructor is not implemented and should not be used.

◆ LIndexSetData() [3/3]

template<class T >

IBTK::LIndexSetData< T >::LIndexSetData ( const LIndexSetData< T > & from )

privatedelete

Note: This constructor is not implemented and should not be used.

Parameters

from	The value to copy to this object.

Member Function Documentation

◆ cacheLocalIndices()

template<class T >

void IBTK::LIndexSetData< T >::cacheLocalIndices	(	SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM >>	patch,
		const SAMRAI::hier::IntVector< NDIM > &	periodic_shift
	)

◆ getLagrangianIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getLagrangianIndices

inline

Returns: A constant reference to the set of Lagrangian data indices that lie in the patch (including the ghost cell region).

◆ getInteriorLagrangianIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getInteriorLagrangianIndices

inline

Returns: A constant reference to the set of Lagrangian data indices that lie in the patch interior.

◆ getGhostLagrangianIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getGhostLagrangianIndices

inline

Returns: A constant reference to the set of Lagrangian data indices that lie in the ghost cell region of the patch data object.

◆ getGlobalPETScIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getGlobalPETScIndices

inline

Returns: A constant reference to the set of global PETSc data indices that lie in the patch (including the ghost cell region).

◆ getInteriorGlobalPETScIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getInteriorGlobalPETScIndices

inline

Returns: A constant reference to the set of global PETSc data indices that lie in the patch interior.

◆ getGhostGlobalPETScIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getGhostGlobalPETScIndices

inline

Returns: A constant reference to the set of global PETSc data indices that lie in the ghost cell region of the patch data object.

◆ getLocalPETScIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getLocalPETScIndices

inline

Returns: A constant reference to the set of local PETSc data indices that lie in the patch (including the ghost cell region).

◆ getInteriorLocalPETScIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getInteriorLocalPETScIndices

inline

Returns: A constant reference to the set of local PETSc data indices that lie in the patch interior.

◆ getGhostLocalPETScIndices()

template<class T >

const std::vector< int > & IBTK::LIndexSetData< T >::getGhostLocalPETScIndices

inline

Returns: A constant reference to the set of local PETSc data indices that lie in the ghost cell region of the patch data object.

◆ getPeriodicShifts()

template<class T >

const std::vector< double > & IBTK::LIndexSetData< T >::getPeriodicShifts

Returns: A constant reference to the periodic shifts for the indices that lie in the patch (including the ghost cell region).

◆ getInteriorPeriodicShifts()

template<class T >

const std::vector< double > & IBTK::LIndexSetData< T >::getInteriorPeriodicShifts

Returns: A constant reference to the periodic shifts for the indices that lie in the patch interior.

◆ getGhostPeriodicShifts()

template<class T >

const std::vector< double > & IBTK::LIndexSetData< T >::getGhostPeriodicShifts

Returns: A constant reference to the periodic shifts for the indices that lie in the ghost cell region of the patch data object.

◆ operator=()

template<class T >

LIndexSetData& IBTK::LIndexSetData< T >::operator= ( const LIndexSetData< T > & that )

privatedelete

Note: This operator is not implemented and should not be used.

Parameters

that	The value to assign to this object.

Returns: A reference to this object.

◆ data_begin()

template<class T >

LSetData< T >::DataIterator IBTK::LSetData< T >::data_begin ( const SAMRAI::hier::Box< NDIM > & box )

inlineinherited

Return an iterator to the first Lagrangian data object in the specified region of index space.

◆ data_end()

template<class T >

LSetData< T >::DataIterator IBTK::LSetData< T >::data_end

inlineinherited

Return an iterator pointing to the end of the collection of Lagrangian data objects associated with the patch data object.

◆ copy() [1/2]

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::copy ( const hier::PatchData< DIM > & src )

virtualinherited

A fast copy between the source and destination. All data is copied from the source into the destination where there is overlap in the index space.

Implements SAMRAI::hier::PatchData< DIM >.

◆ copy() [2/2]

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::copy	(	const hier::PatchData< DIM > &	src,
		const hier::BoxOverlap< DIM > &	overlap
	)

virtualinherited

Copy data from the source into the destination using the designated overlap descriptor. The overlap description should have been computed previously from computeIntersection().

Implements SAMRAI::hier::PatchData< DIM >.

◆ copy2() [1/2]

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::copy2 ( hier::PatchData< DIM > & dst ) const

virtualinherited

A fast copy between the source and destination. Data is copied from the source into the destination where there is overlap in the underlying index space. The copy is performed on the interior plus the ghost cell width (for both the source and destination). If this copy does not understand how to copy data from the destination, then it may throw an exception (aka dump core in a failed assertion).

Implements SAMRAI::hier::PatchData< DIM >.

◆ copy2() [2/2]

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::copy2	(	hier::PatchData< DIM > &	dst,
		const hier::BoxOverlap< DIM > &	overlap
	)		const

virtualinherited

Copy data from the source into the destination using the designated overlap descriptor. The overlap description will have been computed using the appropriate box geometry objects If this member function cannot complete the copy from the destination, then it may throw an exception (aka dump core in a failed assertion).

Implements SAMRAI::hier::PatchData< DIM >.

◆ canEstimateStreamSizeFromBox()

virtual bool SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::canEstimateStreamSizeFromBox ( ) const

virtualinherited

Determines whether the hier::PatchData subclass can estinate the necessary stream size using only index space information.

Implements SAMRAI::hier::PatchData< DIM >.

◆ getDataStreamSize()

virtual int SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::getDataStreamSize ( const hier::BoxOverlap< DIM > & overlap ) const

virtualinherited

Calculate the number of bytes needed to stream the data lying in the specified box domain.

Implements SAMRAI::hier::PatchData< DIM >.

◆ packStream()

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::packStream	(	tbox::AbstractStream &	stream,
		const hier::BoxOverlap< DIM > &	overlap
	)		const

virtualinherited

Pack data lying on the specified index set into the output stream.

Implements SAMRAI::hier::PatchData< DIM >.

◆ unpackStream()

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::unpackStream	(	tbox::AbstractStream &	stream,
		const hier::BoxOverlap< DIM > &	overlap
	)

virtualinherited

Unpack data from the message stream into the specified index set.

Implements SAMRAI::hier::PatchData< DIM >.

◆ appendItem()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::appendItem	(	const hier::Index< DIM > &	index,
		const LSet< T > &	item
	)

inherited

Add a new item to the tail of the irregular index set.

◆ appendItemPointer()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::appendItemPointer	(	const hier::Index< DIM > &	index,
		LSet< T > *	item
	)

inherited

Add a pointer to a new item to the tail of the irregular index set. IndexData will delete the item when it is no longer needed by IndexData. Due to this behavior item must be dynamically created (e.g. new) so that it may be deleted.

NOTE: This is an optimization to avoid an extra constructor call. It should be used with caution, the caller MUST NOT delete the referenced item. Think of this as giving up control of the item to IndexData.

◆ addItem()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::addItem	(	const hier::Index< DIM > &	index,
		const LSet< T > &	item
	)

inherited

Add a new item to the head of the irregular index set

◆ addItemPointer()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::addItemPointer	(	const hier::Index< DIM > &	index,
		LSet< T > *	item
	)

inherited

Add a pointer to a new item to the head of the irregular index set. IndexData will delete the item when it is no longer needed by IndexData. Due to this behavior item must be dynamically created (e.g. new) so that it may be deleted.

NOTE: This is an optimization to avoid an extra constructor call. It should be used with caution, the caller MUST NOT delete the referenced item. Think of this as giving up control of the item to IndexData.

◆ replaceAddItem()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::replaceAddItem	(	const hier::Index< DIM > &	index,
		const LSet< T > &	item
	)

inherited

Remove (deallocate) the item in the irregular index set located at the specified hier::Index and replace it with a new item.

This preserves the iteration order of the orginal insertions.

If an item does not already exist at index this is equivelent to addItem.

◆ replaceAddItemPointer()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::replaceAddItemPointer	(	const hier::Index< DIM > &	index,
		LSet< T > *	item
	)

inherited

Remove (deallocate) the item in the irregular index set located at the specified hier::Index and replace it with a new item.

This preserves the iteration order of the original insertions.

If an item does not already exist at index this is equivelent to addItemPointer.

See addItemPointer for additional comments on pointer semantics.

◆ replaceAppendItem()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::replaceAppendItem	(	const hier::Index< DIM > &	index,
		const LSet< T > &	item
	)

inherited

Remove (deallocate) the item in the irregular index set located at the specified hier::Index and replace it with a new item.

This preserves the iteration order of the orginal insertions.

If an item does not already exist at index this is equivelent to appendItem.

◆ replaceAppendItemPointer()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::replaceAppendItemPointer	(	const hier::Index< DIM > &	index,
		LSet< T > *	item
	)

inherited

Remove (deallocate) the item in the irregular index set located at the specified hier::Index and replace it with a new item.

This preserves the iteration order of the original insertions.

If an item does not already exist at index this is equivelent to appendItemPointer.

See addItemPointer for additional comments on pointer semantics.

◆ removeItem() [1/2]

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeItem ( const hier::Index< DIM > & index )

inherited

Remove (deallocate) the item in the irregular index set located at the specified hier::Index.

◆ removeItem() [2/2]

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeItem ( const int offset )

privateinherited

Remove (deallocate) the item in the irregular index set located at the offset.

NOTE: This is for optimization to avoid computing offset repeatedly.

◆ getNumberOfItems()

int SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::getNumberOfItems ( ) const

inherited

Return the number of data items (i.e. the number of indices) in
the index data list.

◆ removeInsideBox()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeInsideBox ( const hier::Box< DIM > & box )

inherited

Remove (deallocate) any items in the irregular index set located in the index space of the hier::Box.

◆ removeOutsideBox()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeOutsideBox ( const hier::Box< DIM > & box )

inherited

Remove (deallocate) any items in the irregular index set located outside of the index space of the hier::Box.

◆ removeGhostItems()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeGhostItems ( )

inherited

Remove (deallocate) the items in the irregular index set located in the ghost region of the patch.

◆ removeAllItems()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeAllItems ( )

inherited

Remove (deallocate) all items in the irregular index set.

◆ isElement() [1/2]

bool SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::isElement ( const hier::Index< DIM > & index ) const

inherited

Returns true if there is an element of the irregular index set at the specified hier::Index.

◆ isElement() [2/2]

bool SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::isElement ( int offset ) const

privateinherited

Returns true if element exists at offset

◆ getItem()

LSet< T > * SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::getItem ( const hier::Index< DIM > & index ) const

inherited

Given an index, return a pointer to the item located at that index. If there is no item at the index, null is returned.

◆ getSpecializedFromDatabase()

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::getSpecializedFromDatabase ( tbox::Pointer< tbox::Database > database )

virtualinherited

Check to make sure that the class version number is the same as the restart file version number.

Assertions: database must be a non-null pointer.

Implements SAMRAI::hier::PatchData< DIM >.

◆ putSpecializedToDatabase()

virtual void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::putSpecializedToDatabase ( tbox::Pointer< tbox::Database > database )

virtualinherited

Write out the class version number to the database.

Assertions: database must be a non-null pointer.

Implements SAMRAI::hier::PatchData< DIM >.

◆ addItemToList()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::addItemToList	(	const hier::Index< DIM > &	index,
		const int	offset,
		LSet< T > &	item
	)

privateinherited

Internal routine to append item to the linked list representation.

NOTE: Offset is not strictly necessary but was include to avoid computing it repeatedly.

◆ appendItemToList()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::appendItemToList	(	const hier::Index< DIM > &	index,
		const int	offset,
		LSet< T > &	item
	)

privateinherited

◆ removeNodeFromList()

void SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::removeNodeFromList ( IndexDataNode< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > > * node )

privateinherited

Remove the specified node from the linked list.

◆ getBox()

template<int DIM>

const Box<DIM>& SAMRAI::hier::PatchData< DIM >::getBox ( ) const

inherited

Return the box over which this patch data object is defined. All objects in the same patch are defined over the same box, although the patch data objects may interpret how to allocate storage for that box in different ways.

◆ getGhostBox()

template<int DIM>

const Box<DIM>& SAMRAI::hier::PatchData< DIM >::getGhostBox ( ) const

inherited

Return the ghost cell box. The ghost cell box is defined to be the interior box grown by the ghost cell width.

◆ getGhostCellWidth()

template<int DIM>

const IntVector<DIM>& SAMRAI::hier::PatchData< DIM >::getGhostCellWidth ( ) const

inherited

Get the ghost cell width associated with this patch data object.

◆ setTime()

template<int DIM>

void SAMRAI::hier::PatchData< DIM >::setTime ( const double timestamp )

inherited

Set the simulation time stamp for the patch data type. The simulation time is initialized to zero when the patch data type is created.

◆ getTime()

template<int DIM>

double SAMRAI::hier::PatchData< DIM >::getTime ( ) const

inherited

Get the simulation time stamp for the patch data type.

◆ getFromDatabase()

template<int DIM>

virtual void SAMRAI::hier::PatchData< DIM >::getFromDatabase ( tbox::Pointer< tbox::Database > database )

virtualinherited

Checks that class version and restart file version are equal. If so, reads in the data members common to all patch data types from database. This method then calls the getSpecializedFromDatabase() method to retrieve the data special to the concrete patch data type.

◆ putToDatabase()

template<int DIM>

virtual void SAMRAI::hier::PatchData< DIM >::putToDatabase ( tbox::Pointer< tbox::Database > database )

virtualinherited

Writes out the class version number to the database. Then, writes the data members common to all patch data types from database. After the common data is written to the database, the putSpecializedToDatabase() method is invoked.

◆ setGhostBox()

template<int DIM>

void SAMRAI::hier::PatchData< DIM >::setGhostBox ( const Box< DIM > & ghost_box )

protectedinherited

This protected method is used by concrete patch data subclasses to set the ghost box over which the patch data will be allocated. Note that this allows the ghost box to be inconsistant with its standard interpretation as the patch domain box grown by the ghost cell width (as set in the constructor).

This function is included to treat some special cases for concrete patch data types and should be used with caution.

Member Data Documentation

◆ d_lag_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_lag_indices

private

◆ d_interior_lag_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_interior_lag_indices

private

◆ d_ghost_lag_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_ghost_lag_indices

private

◆ d_global_petsc_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_global_petsc_indices

private

◆ d_interior_global_petsc_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_interior_global_petsc_indices

private

◆ d_ghost_global_petsc_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_ghost_global_petsc_indices

private

◆ d_local_petsc_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_local_petsc_indices

private

◆ d_interior_local_petsc_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_interior_local_petsc_indices

private

◆ d_ghost_local_petsc_indices

template<class T >

std::vector<int> IBTK::LIndexSetData< T >::d_ghost_local_petsc_indices

private

◆ d_periodic_shifts

template<class T >

std::vector<double> IBTK::LIndexSetData< T >::d_periodic_shifts

private

◆ d_interior_periodic_shifts

template<class T >

std::vector<double> IBTK::LIndexSetData< T >::d_interior_periodic_shifts

private

◆ d_ghost_periodic_shifts

template<class T >

std::vector<double> IBTK::LIndexSetData< T >::d_ghost_periodic_shifts

private

◆ d_data

std::vector<IndexDataNode<DIM,LSet< T > ,SAMRAI::pdat::CellGeometry< NDIM > > *> SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::d_data

privateinherited

◆ d_list_head

IndexDataNode<DIM,LSet< T > ,SAMRAI::pdat::CellGeometry< NDIM > >* SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::d_list_head

privateinherited

◆ d_list_tail

IndexDataNode<DIM,LSet< T > ,SAMRAI::pdat::CellGeometry< NDIM > >* SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::d_list_tail

privateinherited

◆ d_number_items

int SAMRAI::pdat::IndexData< DIM, LSet< T > , SAMRAI::pdat::CellGeometry< NDIM > >::d_number_items

privateinherited

◆ d_box

template<int DIM>

Box<DIM> SAMRAI::hier::PatchData< DIM >::d_box

privateinherited

◆ d_ghost_box

template<int DIM>

Box<DIM> SAMRAI::hier::PatchData< DIM >::d_ghost_box

privateinherited

◆ d_ghosts

template<int DIM>

IntVector<DIM> SAMRAI::hier::PatchData< DIM >::d_ghosts

privateinherited

◆ d_timestamp

template<int DIM>

double SAMRAI::hier::PatchData< DIM >::d_timestamp

privateinherited

The documentation for this class was generated from the following files:

ibtk/include/ibtk/LEInteractor.h
ibtk/include/ibtk/LIndexSetData.h
ibtk/include/ibtk/private/LIndexSetData-inl.h

Public Types

Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Detailed Description

template<class T> class IBTK::LIndexSetData< T >

Member Typedef Documentation

◆ CellIterator

◆ SetIterator

◆ DataIterator

◆ Iterator

◆ ConstIterator

Constructor & Destructor Documentation

◆ LIndexSetData() [1/3]

◆ ~LIndexSetData()

◆ LIndexSetData() [2/3]

◆ LIndexSetData() [3/3]

Member Function Documentation

◆ cacheLocalIndices()

◆ getLagrangianIndices()

◆ getInteriorLagrangianIndices()

◆ getGhostLagrangianIndices()

◆ getGlobalPETScIndices()

◆ getInteriorGlobalPETScIndices()

◆ getGhostGlobalPETScIndices()

◆ getLocalPETScIndices()

◆ getInteriorLocalPETScIndices()

◆ getGhostLocalPETScIndices()

◆ getPeriodicShifts()

◆ getInteriorPeriodicShifts()

◆ getGhostPeriodicShifts()

◆ operator=()

◆ data_begin()

◆ data_end()

◆ copy() [1/2]

◆ copy() [2/2]

◆ copy2() [1/2]

◆ copy2() [2/2]

◆ canEstimateStreamSizeFromBox()

◆ getDataStreamSize()

◆ packStream()

◆ unpackStream()

◆ appendItem()

◆ appendItemPointer()

◆ addItem()

◆ addItemPointer()

◆ replaceAddItem()

◆ replaceAddItemPointer()

◆ replaceAppendItem()

◆ replaceAppendItemPointer()

◆ removeItem() [1/2]

◆ removeItem() [2/2]

◆ getNumberOfItems()

◆ removeInsideBox()

◆ removeOutsideBox()

◆ removeGhostItems()

◆ removeAllItems()

◆ isElement() [1/2]

◆ isElement() [2/2]

◆ getItem()

◆ getSpecializedFromDatabase()

◆ putSpecializedToDatabase()

◆ addItemToList()

◆ appendItemToList()

◆ removeNodeFromList()

◆ getBox()

◆ getGhostBox()

◆ getGhostCellWidth()

◆ setTime()

◆ getTime()

◆ getFromDatabase()

◆ putToDatabase()

◆ setGhostBox()

Member Data Documentation

◆ d_lag_indices

◆ d_interior_lag_indices

◆ d_ghost_lag_indices

◆ d_global_petsc_indices

◆ d_interior_global_petsc_indices

template<class T>
class IBTK::LIndexSetData< T >