IBAMR
An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method
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This is the complete list of members for IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator, including all inherited members.
addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) | IBTK::HierarchyIntegrator | protectedvirtual |
advanceHierarchy(double dt) | IBTK::HierarchyIntegrator | virtual |
advanceLevel(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
AdvDiffHierarchyIntegrator(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart) | IBAMR::AdvDiffHierarchyIntegrator | protected |
AdvDiffSemiImplicitHierarchyIntegrator(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
allocatePatchData(int data_idx, double data_time, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBTK::HierarchyIntegrator | virtual |
ApplyGradientDetectorCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
applyGradientDetectorSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) | IBTK::HierarchyIntegrator | protectedvirtual |
applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
atRegridPoint() const | IBTK::HierarchyIntegrator | |
atRegridPointSpecialized() const | IBTK::HierarchyIntegrator | protectedvirtual |
atRegridTimeStep() const | IBTK::HierarchyIntegrator | inlineprotected |
BrinkmanAdvDiffSemiImplicitHierarchyIntegrator(const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | |
buildHierarchyMathOps(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) | IBTK::HierarchyIntegrator | protected |
coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
d_apply_gradient_detector_callback_ctxs (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_apply_gradient_detector_callbacks (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_bdry_extrap_type (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_brinkman_penalization | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_cfl_max | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_child_integrators (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_coarsest_reset_ln (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_copy_scratch_to_current_fast (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_copy_scratch_to_current_slow (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_current_context | IBTK::HierarchyIntegrator | protected |
d_current_cycle_num (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_current_data (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_current_dt (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_current_num_cycles (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_default_convective_difference_form | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_default_convective_op_input_db (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_default_convective_op_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_default_convective_time_stepping_type | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_default_diffusion_time_stepping_type | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_default_init_convective_time_stepping_type (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_diffusion_coef_fcn (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_diffusion_coef_rhs_map (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_diffusion_coef_rhs_var (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_diffusion_coef_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_dt_growth_factor (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_dt_init (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_dt_max (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_dt_min (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_dt_previous (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_enable_logging (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_enable_logging_solver_iterations (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_end_time (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_F_fcn (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_F_output (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_F_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_fill_after_regrid_bc_idxs | IBTK::HierarchyIntegrator | protected |
d_fill_after_regrid_phys_bdry_bc_op (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_fill_after_regrid_prolong_alg (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_finest_reset_ln (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_gridding_alg (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_helmholtz_precond_db (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_precond_type (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_rhs_ops (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_rhs_ops_need_init (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_solver_db (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_solver_type (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_solvers (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_solvers_need_init (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_sub_precond_db (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_helmholtz_sub_precond_type (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_hier_bdry_fill_ops (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_hier_cc_data_ops (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_hier_fc_data_ops (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_hier_math_ops (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_hier_sc_data_ops (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_hierarchy (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_hierarchy_is_initialized (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_integrate_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_integrate_hierarchy_callbacks (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_integrator_is_initialized (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_integrator_step (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_integrator_time (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_load_balancer (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_manage_hier_math_ops (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_max_integrator_steps (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_may_need_to_reset_hierarchy_configuration (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_N_old_var (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_N_var | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_new_context (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_new_data (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_no_fill_op (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_num_cycles (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_object_name (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_parent_integrator (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_plot_context (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_plot_data (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_postprocess_integrate_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_postprocess_integrate_hierarchy_callbacks (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_preprocess_integrate_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_preprocess_integrate_hierarchy_callbacks | IBTK::HierarchyIntegrator | protected |
d_Q_bc_coef (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_Cb_map | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_Cb_rhs_map (defined in IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_convective_op (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_convective_op_input_db (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_convective_op_needs_init (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_convective_op_type (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_convective_time_stepping_type (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_damping_coef (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_Db_map (defined in IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_Db_rhs_map (defined in IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_difference_form (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_diffusion_coef (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_diffusion_coef_variable (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_diffusion_time_stepping_type (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_F_map (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_Fb_map (defined in IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_init (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_init_convective_time_stepping_type (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_is_diffusion_coef_variable (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_N_map (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_N_old_map (defined in IBAMR::AdvDiffSemiImplicitHierarchyIntegrator) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_output (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_Q_rhs_map (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_reset_fcns | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_reset_fcns_ctx (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_reset_priority (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_rhs_var (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_time_independent | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protected |
d_Q_u_map (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_Q_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_registered_for_restart (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_regrid_hierarchy_callback_ctxs (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_regrid_hierarchy_callbacks (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_regrid_interval (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_regrid_mode (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_rhs_vecs (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_scratch_context (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_scratch_data (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_scratch_variables (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_sol_vecs (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_start_time (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_state_var_init_fcns (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_state_variables (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_tag_buffer (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_u_fcn (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_u_is_div_free (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_u_var | IBAMR::AdvDiffHierarchyIntegrator | protected |
d_visit_writer (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
d_workload_idx | IBTK::HierarchyIntegrator | protected |
d_workload_var (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protected |
deallocatePatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
executeApplyGradientDetectorCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) | IBTK::HierarchyIntegrator | protectedvirtual |
executeIntegrateHierarchyCallbackFcns(double current_time, double new_time, int cycle_num) | IBTK::HierarchyIntegrator | protectedvirtual |
executePostprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles) | IBTK::HierarchyIntegrator | protectedvirtual |
executePreprocessIntegrateHierarchyCallbackFcns(double current_time, double new_time, int num_cycles) | IBTK::HierarchyIntegrator | protectedvirtual |
executeRegridHierarchyCallbackFcns(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time) | IBTK::HierarchyIntegrator | protectedvirtual |
getAdvectionVelocity(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getAdvectionVelocityFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getAdvectionVelocityIsDivergenceFree(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getBrinkmanPenalization() const | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | inline |
getCoarsenAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
getCoarsenSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
getContext(VariableContextType ctx_type) const | IBTK::HierarchyIntegrator | |
getConvectiveDifferencingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getConvectiveOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
getConvectiveOperatorInputDatabase(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getConvectiveOperatorType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getCurrentContext() const | IBTK::HierarchyIntegrator | |
getCurrentCycleNumber() const | IBTK::HierarchyIntegrator | virtual |
getCurrentTimeStepSize() const | IBTK::HierarchyIntegrator | virtual |
getDampingCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getDefaultConvectiveDifferencingType() const | IBAMR::AdvDiffHierarchyIntegrator | |
getDefaultConvectiveOperatorInputDatabase() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getDefaultConvectiveOperatorType() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getDefaultConvectiveTimeSteppingType() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getDefaultDiffusionTimeSteppingType() const | IBAMR::AdvDiffHierarchyIntegrator | |
getDefaultInitialConvectiveTimeSteppingType() const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getDiffusionCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getDiffusionCoefficientFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getDiffusionTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getEndTime() const | IBTK::HierarchyIntegrator | |
getGhostfillRefineAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
getGhostfillRefineSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
getGriddingAlgorithm() const | IBTK::HierarchyIntegrator | |
getHelmholtzRHSOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
getHelmholtzSolver(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
getHierarchyMathOps() const | IBTK::HierarchyIntegrator | |
getInitialConditions(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getInitialConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
getIntegratorStep() const | IBTK::HierarchyIntegrator | |
getIntegratorTime() const | IBTK::HierarchyIntegrator | |
getLevelDt(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
getMaximumTimeStepSize() | IBTK::HierarchyIntegrator | |
getMaximumTimeStepSizeSpecialized() override | IBAMR::AdvDiffHierarchyIntegrator | protectedvirtual |
getMaxIntegratorSteps() const | IBTK::HierarchyIntegrator | |
getMinimumTimeStepSize() | IBTK::HierarchyIntegrator | |
getMinimumTimeStepSizeSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
getName() const | IBTK::HierarchyIntegrator | |
getNewContext() const | IBTK::HierarchyIntegrator | |
getNumberOfCycles() const override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | virtual |
getPatchHierarchy() const | IBTK::HierarchyIntegrator | |
getPhysicalBcCoefs(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getPlotContext() const | IBTK::HierarchyIntegrator | |
getProlongRefineAlgorithm(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
getProlongRefineSchedules(const std::string &name) const | IBTK::HierarchyIntegrator | protected |
getResetFunctions(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getResetPriority(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getScratchContext() const | IBTK::HierarchyIntegrator | |
getSourceTerm(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getSourceTermFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var) const | IBAMR::AdvDiffHierarchyIntegrator | |
getStartTime() const | IBTK::HierarchyIntegrator | |
getVisItDataWriter() const | IBTK::HierarchyIntegrator | |
getWorkloadDataIndex() const | IBTK::HierarchyIntegrator | |
HierarchyIntegrator(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart) | IBTK::HierarchyIntegrator | |
initializeCompositeHierarchyData(double init_data_time, bool initial_time) | IBTK::HierarchyIntegrator | |
initializeCompositeHierarchyDataSpecialized(double init_data_time, bool initial_time) override | IBAMR::AdvDiffHierarchyIntegrator | protectedvirtual |
initializeHierarchyIntegrator(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | virtual |
initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(NULL), bool allocate_data=true) override | IBTK::HierarchyIntegrator | virtual |
initializeLevelDataSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) | IBTK::HierarchyIntegrator | protectedvirtual |
initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) | IBTK::HierarchyIntegrator | virtual |
integrateHierarchy(double current_time, double new_time, int cycle_num=0) | IBTK::HierarchyIntegrator | |
IntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
integrateHierarchySpecialized(double current_time, double new_time, int cycle_num=0) override | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | protectedvirtual |
isAllocatedPatchData(int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const | IBTK::HierarchyIntegrator | |
isDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) const (defined in IBAMR::AdvDiffHierarchyIntegrator) | IBAMR::AdvDiffHierarchyIntegrator | |
postprocessIntegrateHierarchy(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles=1) override | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | virtual |
PostprocessIntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
preprocessIntegrateHierarchy(double current_time, double new_time, int num_cycles=1) override | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | virtual |
PreprocessIntegrateHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBTK::HierarchyIntegrator | virtual |
putToDatabaseSpecialized(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protectedvirtual |
registerAdvectionVelocity(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) | IBAMR::AdvDiffHierarchyIntegrator | virtual |
registerApplyGradientDetectorCallback(ApplyGradientDetectorCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
registerBrinkmanAdvDiffBcHelper(SAMRAI::tbox::Pointer< IBAMR::BrinkmanAdvDiffBcHelper > brinkman_penalization) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | |
registerChildHierarchyIntegrator(HierarchyIntegrator *child_integrator) | IBTK::HierarchyIntegrator | protected |
registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
registerDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var) | IBAMR::AdvDiffHierarchyIntegrator | |
registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
registerIntegrateHierarchyCallback(IntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer) | IBTK::HierarchyIntegrator | virtual |
registerParentHierarchyIntegrator(HierarchyIntegrator *parent_integrator) | IBTK::HierarchyIntegrator | protected |
registerPostprocessIntegrateHierarchyCallback(PostprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
registerPreprocessIntegrateHierarchyCallback(PreprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr) | IBTK::HierarchyIntegrator | protected |
registerRegridHierarchyCallback(RegridHierarchyCallbackFcnPtr, void *ctx=nullptr) | IBTK::HierarchyIntegrator | |
registerResetFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, ResetPropertiesFcnPtr callback, void *ctx) | IBAMR::AdvDiffHierarchyIntegrator | |
registerSourceTerm(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var, const bool output_F=true) | IBAMR::AdvDiffHierarchyIntegrator | virtual |
registerTransportedQuantity(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, const bool output_Q=true) override | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | virtual |
registerVariable(int ¤t_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< CartGridFunction > init_fcn=SAMRAI::tbox::Pointer< CartGridFunction >(NULL), const bool register_for_restart=true) | IBTK::HierarchyIntegrator | |
registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(NULL), const bool register_for_restart=true) | IBTK::HierarchyIntegrator | |
registerVariables() | IBAMR::AdvDiffHierarchyIntegrator | protected |
registerVisItDataWriter(SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer) | IBTK::HierarchyIntegrator | |
regriddingHierarchy() const | IBTK::HierarchyIntegrator | inlineprotected |
regridHierarchy() | IBTK::HierarchyIntegrator | virtual |
regridHierarchyBeginSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
RegridHierarchyCallbackFcnPtr typedef | IBTK::HierarchyIntegrator | |
regridHierarchyEndSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBTK::HierarchyIntegrator | virtual |
resetHierarchyConfigurationSpecialized(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | protectedvirtual |
resetIntegratorToPreadvanceState() | IBTK::HierarchyIntegrator | |
resetIntegratorToPreadvanceStateSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
ResetPropertiesFcnPtr typedef | IBAMR::AdvDiffHierarchyIntegrator | |
resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
resetTimeDependentHierarchyData(double new_time) | IBTK::HierarchyIntegrator | |
resetTimeDependentHierarchyDataSpecialized(double new_time) | IBTK::HierarchyIntegrator | protectedvirtual |
Serializable() | SAMRAI::tbox::Serializable | |
setAdvectionVelocity(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var) | IBAMR::AdvDiffHierarchyIntegrator | |
setAdvectionVelocityFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > u_fcn) | IBAMR::AdvDiffHierarchyIntegrator | |
setAdvectionVelocityIsDivergenceFree(SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > u_var, bool is_div_free) | IBAMR::AdvDiffHierarchyIntegrator | |
setConvectiveDifferencingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, ConvectiveDifferencingType difference_form) | IBAMR::AdvDiffHierarchyIntegrator | |
setConvectiveOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< ConvectiveOperator > convective_op) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setConvectiveOperatorInputDatabase(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setConvectiveOperatorNeedsInit(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setConvectiveOperatorsNeedInit() | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setConvectiveOperatorType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, const std::string &op_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, TimeSteppingType convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setDampingCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, double lambda) | IBAMR::AdvDiffHierarchyIntegrator | |
setDefaultConvectiveDifferencingType(ConvectiveDifferencingType default_convective_difference_form) | IBAMR::AdvDiffHierarchyIntegrator | |
setDefaultConvectiveOperatorInputDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setDefaultConvectiveOperatorType(const std::string &op_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setDefaultConvectiveTimeSteppingType(TimeSteppingType default_convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setDefaultDiffusionTimeSteppingType(TimeSteppingType default_diffusion_time_stepping_type) | IBAMR::AdvDiffHierarchyIntegrator | |
setDefaultInitialConvectiveTimeSteppingType(TimeSteppingType default_init_convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setDiffusionCoefficient(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, double kappa) | IBAMR::AdvDiffHierarchyIntegrator | |
setDiffusionCoefficientFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > D_fcn) | IBAMR::AdvDiffHierarchyIntegrator | |
setDiffusionCoefficientVariable(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > D_var) | IBAMR::AdvDiffHierarchyIntegrator | |
setDiffusionTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, TimeSteppingType time_stepping_type) | IBAMR::AdvDiffHierarchyIntegrator | |
setHelmholtzRHSOperator(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< IBTK::LaplaceOperator > helmholtz_rhs_operator) | IBAMR::AdvDiffHierarchyIntegrator | |
setHelmholtzRHSOperatorNeedsInit(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
setHelmholtzRHSOperatorsNeedInit() | IBAMR::AdvDiffHierarchyIntegrator | |
setHelmholtzSolver(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< IBTK::PoissonSolver > helmholtz_solver) | IBAMR::AdvDiffHierarchyIntegrator | |
setHelmholtzSolverNeedsInit(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var) | IBAMR::AdvDiffHierarchyIntegrator | |
setHelmholtzSolversNeedInit() | IBAMR::AdvDiffHierarchyIntegrator | |
setInitialConditions(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_init) | IBAMR::AdvDiffHierarchyIntegrator | |
setInitialConvectiveTimeSteppingType(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, TimeSteppingType init_convective_time_stepping_type) | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
setPhysicalBcCoef(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::solv::RobinBcCoefStrategy< NDIM > *Q_bc_coef) | IBAMR::AdvDiffHierarchyIntegrator | |
setPhysicalBcCoefs(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &Q_bc_coef) | IBAMR::AdvDiffHierarchyIntegrator | |
setResetPriority(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, int priority) | IBAMR::AdvDiffHierarchyIntegrator | |
setSourceTerm(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var) | IBAMR::AdvDiffHierarchyIntegrator | |
setSourceTermFunction(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > F_var, SAMRAI::tbox::Pointer< IBTK::CartGridFunction > F_fcn) | IBAMR::AdvDiffHierarchyIntegrator | |
setTransportQuantityTimeIndependent(SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > Q_var, bool Q_time_independent) | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | |
setupPlotData() | IBTK::HierarchyIntegrator | |
setupPlotDataSpecialized() | IBTK::HierarchyIntegrator | protectedvirtual |
setupTagBuffer(SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) | IBTK::HierarchyIntegrator | protected |
skipCycle(double current_time, double new_time, int cycle_num=0) | IBTK::HierarchyIntegrator | |
StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | |
stepsRemaining() const | IBTK::HierarchyIntegrator | |
SYNCH_CURRENT_DATA_ALG | IBTK::HierarchyIntegrator | protectedstatic |
SYNCH_NEW_DATA_ALG (defined in IBTK::HierarchyIntegrator) | IBTK::HierarchyIntegrator | protectedstatic |
synchronizeHierarchyData(VariableContextType ctx_type) | IBTK::HierarchyIntegrator | |
synchronizeHierarchyDataSpecialized(VariableContextType ctx_type) | IBTK::HierarchyIntegrator | protectedvirtual |
updateWorkloadEstimates() | IBTK::HierarchyIntegrator | |
~AdvDiffHierarchyIntegrator() | IBAMR::AdvDiffHierarchyIntegrator | |
~AdvDiffSemiImplicitHierarchyIntegrator()=default | IBAMR::AdvDiffSemiImplicitHierarchyIntegrator | |
~BrinkmanAdvDiffSemiImplicitHierarchyIntegrator()=default | IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator | |
~HierarchyIntegrator() | IBTK::HierarchyIntegrator | |
~Serializable() | SAMRAI::tbox::Serializable | virtual |
~StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |