IBAMR
An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method
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This is the complete list of members for IBAMR::IBStandardInitializer, including all inherited members.
computeGlobalNodeCountOnPatchLevel(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time) override | IBAMR::IBRedundantInitializer | virtual |
computeLocalNodeCountOnPatchLevel(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time) override | IBAMR::IBRedundantInitializer | virtual |
d_anchor_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_bdry_mass_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_beam_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_data_processed | IBAMR::IBRedundantInitializer | protected |
d_directors (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_global_index_offset (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_instrument_idx (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_num_vertex (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_object_name (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_rod_edge_map (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_rod_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_source_idx (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_spring_edge_map (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_spring_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_target_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_vertex_offset (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_vertex_posn (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_xspring_edge_map (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
d_xspring_spec_data (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | protected |
Edge typedef (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | |
getCanonicalLagrangianIndex(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getIsAllLagrangianDataInDomain(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) const override | IBAMR::IBRedundantInitializer | virtual |
getLevelHasLagrangianData(int level_number, bool can_be_refined) const override | IBAMR::IBRedundantInitializer | virtual |
getPatchVertices(std::vector< std::pair< int, int > > &point_indices, SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) const | IBAMR::IBRedundantInitializer | protected |
getPatchVerticesAtLevel(std::vector< std::pair< int, int > > &point_indices, SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getShiftedVertexPosn(const std::pair< int, int > &point_index, int level_number, const double *domain_x_lower, const double *domain_x_upper, const SAMRAI::hier::IntVector< NDIM > &periodic_shift) const | IBAMR::IBRedundantInitializer | protected |
getVertexAnchorSpec(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getVertexBdryMassSpec(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getVertexDirectors(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getVertexInstrumentationIndices(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getVertexPosn(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getVertexSourceIndices(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
getVertexTargetSpec(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
IBRedundantInitializer(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::IBRedundantInitializer | |
IBRedundantInitializer() | IBAMR::IBRedundantInitializer | protected |
IBRedundantInitializer(const IBRedundantInitializer &from)=delete | IBAMR::IBRedundantInitializer | protected |
IBStandardInitializer(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::IBStandardInitializer | |
init() override | IBAMR::IBStandardInitializer | virtual |
InitAnchorPtOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitBeamDataOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitBoundaryMassOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitDirectorAndRodOnLevel typedef | IBAMR::IBRedundantInitializer | |
initializeAnchorPts() | IBAMR::IBRedundantInitializer | protected |
initializeBeams() | IBAMR::IBRedundantInitializer | protected |
initializeBoundaryMass() | IBAMR::IBRedundantInitializer | protected |
initializeDataOnPatchLevel(int lag_node_index_idx, unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > X_data, SAMRAI::tbox::Pointer< IBTK::LData > U_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
initializeDirectorAndRods() | IBAMR::IBRedundantInitializer | protected |
initializeDirectorDataOnPatchLevel(unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > D_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
initializeInstrumentationData() | IBAMR::IBRedundantInitializer | protected |
initializeLSiloDataWriter(int level_number) | IBAMR::IBRedundantInitializer | protected |
initializeMassDataOnPatchLevel(unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > M_data, SAMRAI::tbox::Pointer< IBTK::LData > K_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
initializeSourceData() | IBAMR::IBRedundantInitializer | protected |
initializeSprings() | IBAMR::IBRedundantInitializer | protected |
initializeStructureIndexingOnPatchLevel(std::map< int, std::string > &strct_id_to_strct_name_map, std::map< int, std::pair< int, int > > &strct_id_to_lag_idx_range_map, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
initializeStructurePosition() | IBAMR::IBRedundantInitializer | protected |
initializeTargetPts() | IBAMR::IBRedundantInitializer | protected |
initializeXSprings() | IBAMR::IBRedundantInitializer | protected |
InitInstrumentationOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitSourceOnLevel typedef (defined in IBAMR::IBRedundantInitializer) | IBAMR::IBRedundantInitializer | |
InitSpringDataOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitStructureOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitTargetPtOnLevel typedef | IBAMR::IBRedundantInitializer | |
InitXSpringDataOnLevel typedef | IBAMR::IBRedundantInitializer | |
LInitStrategy()=default | IBTK::LInitStrategy | |
IBAMR::IBRedundantInitializer::operator=(const IBRedundantInitializer &that)=delete | IBAMR::IBRedundantInitializer | protected |
registerInitAnchorPtFunction(InitAnchorPtOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitBeamDataFunction(InitBeamDataOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitBoundaryMassFunction(InitBoundaryMassOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitDirectorAndRodFunction(InitDirectorAndRodOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitInstrumentationFunction(InitInstrumentationOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitSourceFunction(InitSourceOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitSpringDataFunction(InitSpringDataOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitStructureFunction(InitStructureOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitTargetPtFunction(InitTargetPtOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerInitXSpringDataFunction(InitXSpringDataOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
registerLSiloDataWriter(SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter > silo_writer) | IBAMR::IBRedundantInitializer | |
setStructureNamesOnLevel(const int &level_num, const std::vector< std::string > &strct_names) | IBAMR::IBRedundantInitializer | |
tagCellsForInitialRefinement(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index) override | IBAMR::IBRedundantInitializer | virtual |
~IBRedundantInitializer() | IBAMR::IBRedundantInitializer | virtual |
~IBStandardInitializer() | IBAMR::IBStandardInitializer | |
~LInitStrategy()=default | IBTK::LInitStrategy | virtual |