IBTK::HierarchyMathOps Class Reference

Class HierarchyMathOps provides functionality to perform "composite-grid" mathematical operations on a range of levels in a SAMRAI::hier::PatchHierarchy object. More...

#include </home/runner/work/IBAMR/IBAMR/ibtk/include/ibtk/HierarchyMathOps.h>

Inheritance diagram for IBTK::HierarchyMathOps:

Public Member Functions
	HierarchyMathOps (std::string name, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number, std::string coarsen_op_name="CONSERVATIVE_COARSEN")
	Constructor. More...
virtual	~HierarchyMathOps ()=default
	Destructor.
Methods to set the hierarchy and range of levels.
void	setPatchHierarchy (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy)
	Reset the patch hierarchy over which operations occur.
void	resetLevels (int coarsest_ln, int finest_ln)
	Reset range of patch levels over which operations occur. More...

Methods to get cell weight data.
SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	getCellWeightVariable () const
	Access the SAMRAI::pdat::CellVariable that is used to store cell weights. These weights are used in computing discrete vector norms. More...
int	getCellWeightPatchDescriptorIndex ()
	Access the patch descriptor index that corresponds to the SAMRAI::pdat::CellVariable that is used to store cell weights. These weights are used in computing discrete vector norms. More...
SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	getFaceWeightVariable () const
	Access the SAMRAI::pdat::FaceVariable that is used to store face weights. These weights are used in computing discrete vector norms. More...
int	getFaceWeightPatchDescriptorIndex ()
	Access the patch descriptor index that corresponds to the SAMRAI::pdat::FaceVariable that is used to store face weights. These weights are used in computing discrete vector norms. More...
SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	getSideWeightVariable () const
	Access the SAMRAI::pdat::SideVariable that is used to store side weights. These weights are used in computing discrete vector norms. More...
int	getSideWeightPatchDescriptorIndex ()
	Access the patch descriptor index that corresponds to the SAMRAI::pdat::SideVariable that is used to store side weights. These weights are used in computing discrete vector norms. More...
double	getVolumeOfPhysicalDomain () const
	Returns the volume of the physical domain.
SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	getPatchHierarchy () const
	Get the patch hierarchy object associated with the class.
void	setCoarsenOperatorName (const std::string &coarsen_op_name)
	Set the name of the coarsen operator used for synchronizing the coarse-fine boundary.
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a cell-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a face-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a face-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a side-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a side-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Compute the node-centered curl of a side-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the edge-centered curl of a side-centered vector field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a node-centered scalar field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a node-centered scalar field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a edge-centered vector field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a side-centered vector field using centered differences. More...
void	div (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src2_depth=0)
	Compute the cell-centered divergence of a cell-centered vector field using centered differences. More...
void	div (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, bool src1_cf_bdry_synch, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src2_depth=0)
	Compute the cell-centered divergence of a face-centered normal vector field using centered differences. More...
void	div (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, bool src1_cf_bdry_synch, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src2_depth=0)
	Compute the cell-centered divergence of a side-centered normal vector field using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from a face-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from a side-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a face-centered normal vector/tensor field from a cell-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a side-centered normal vector/tensor field from a cell-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from a node-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from an edge-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a node-centered vector/tensor field from a face-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a node-centered vector/tensor field from a side-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. More...
void	harmonic_interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a side-centered normal vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	harmonic_interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	harmonic_interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. Interpolate both in the cell and in the ghost region. More...
void	interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. More...
void	harmonic_interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	harmonic_interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, const SAMRAI::solv::PoissonSpecifications &poisson_spec, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute the Laplacian of a scalar quantity using centered differences. More...
void	laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, const SAMRAI::solv::PoissonSpecifications &poisson_spec, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr)
	Compute the Laplacian of a scalar quantity using centered differences. More...
void	vc_laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, double alpha, double beta, int coef1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > coef1_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, IBTK::VCInterpType coef1_interp_type=VC_HARMONIC_INTERP, int coef2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > coef2_var=nullptr, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr)
	Compute dst = alpha div coef1 ((grad src1) + (grad src1)^T) + beta coef2 src1 + gamma src2, the variable coefficient generalized Laplacian of src1. More...
void	vc_laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, double alpha, double beta, int coef1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > coef1_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, IBTK::VCInterpType coef1_interp_type=VC_HARMONIC_INTERP, int coef2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > coef2_var=nullptr, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr)
	Compute dst = alpha div coef1 ((grad src1) + (grad src1)^T) + beta coef2 src1 + gamma src2, the variable coefficient generalized Laplacian of src1. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseL1Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var)
	Compute dst = |src|_1, pointwise. More...
void	pointwiseL2Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var)
	Compute dst = |src|_2, pointwise. More...
void	pointwiseMaxNorm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var)
	Compute dst = |src|_oo, pointwise. More...
void	pointwiseL1Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var)
	Compute dst = |src|_1, pointwise. More...
void	pointwiseL2Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var)
	Compute dst = |src|_2, pointwise. More...
void	pointwiseMaxNorm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var)
	Compute dst = |src|_oo, pointwise. More...
void	strain_rate (int dst1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst1_var, int dst2_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst2_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered strain rate of a side-centered vector field using centered differences. More...
void	strain_rate (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered strain rate of a side-centered vector field using centered differences. More...
void	enforceHangingNodeConstraints (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var)
	Enforce hanging node constraints in the sense of making the resulting bilinear or trilinear interpolation of nodal data continuous across the coarse-fine interface. More...

Detailed Description

Class HierarchyMathOps provides functionality to perform "composite-grid" mathematical operations on a range of levels in a SAMRAI::hier::PatchHierarchy object.

For nodal destination data, if the provided variable has fineBoundaryRepresentsVariable() == false and synch_dst_cf_interface == true then each routine will call HierarchyMathOps::enforceHangingNodeConstraints() to achieve a conforming bi/trilinear discretization.

Note

All specified variable descriptor indices must refer to SAMRAI::hier::Variable / SAMRAI::hier::VariableContext pairs that have been registered with the SAMRAI::hier::VariableDatabase.

Constructor & Destructor Documentation

HierarchyMathOps()

IBTK::HierarchyMathOps::HierarchyMathOps	(	std::string	name,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	coarsest_ln = invalid_level_number,
		int	finest_ln = invalid_level_number,
		std::string	coarsen_op_name = "CONSERVATIVE_COARSEN"
	)

Constructor.

Does nothing interesting.

Member Function Documentation

curl() [1/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered curl of a cell-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [2/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered curl of a face-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [3/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered curl of a side-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [4/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the edge-centered curl of a side-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [5/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered curl of a face-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [6/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Compute the node-centered curl of a side-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [7/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered curl of a side-centered vector field using centered differences.

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

div() [1/3]

void IBTK::HierarchyMathOps::div	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src2_depth = 0
	)

Compute the cell-centered divergence of a cell-centered vector field using centered differences.

Sets dst = alpha div src1 + beta src2.

Compute the divergence of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

div() [2/3]

void IBTK::HierarchyMathOps::div	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		bool	src1_cf_bdry_synch,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src2_depth = 0
	)

Compute the cell-centered divergence of a face-centered normal vector field using centered differences.

Sets dst = alpha div src1 + beta src2.

Compute the divergence of a vector field using centered differences. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the differencing.

See also

setPatchHierarchy

resetLevels

div() [3/3]

void IBTK::HierarchyMathOps::div	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		bool	src1_cf_bdry_synch,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src2_depth = 0
	)

Compute the cell-centered divergence of a side-centered normal vector field using centered differences.

Sets dst = alpha div src1 + beta src2.

Compute the divergence of a vector field using centered differences. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the differencing.

See also

setPatchHierarchy

resetLevels

enforceHangingNodeConstraints()

void IBTK::HierarchyMathOps::enforceHangingNodeConstraints	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var
	)

Enforce hanging node constraints in the sense of making the resulting bilinear or trilinear interpolation of nodal data continuous across the coarse-fine interface.

Warning

getCellWeightPatchDescriptorIndex()

int IBTK::HierarchyMathOps::getCellWeightPatchDescriptorIndex

(

)

Access the patch descriptor index that corresponds to the SAMRAI::pdat::CellVariable that is used to store cell weights. These weights are used in computing discrete vector norms.

If a cell is not refined in the hierarchy, its weight is set to its volume. If a cell is refined, its weight is set to zero.

getCellWeightVariable()

Pointer< CellVariable< NDIM, double > > IBTK::HierarchyMathOps::getCellWeightVariable

(

)

const

Access the SAMRAI::pdat::CellVariable that is used to store cell weights. These weights are used in computing discrete vector norms.

If a cell is not refined in the hierarchy, its weight is set to its volume. If a cell is refined, its weight is set to zero.

getFaceWeightPatchDescriptorIndex()

int IBTK::HierarchyMathOps::getFaceWeightPatchDescriptorIndex

(

)

Access the patch descriptor index that corresponds to the SAMRAI::pdat::FaceVariable that is used to store face weights. These weights are used in computing discrete vector norms.

If a face is not refined in the hierarchy, its weight is set to its volume. If a face is refined, its weight is set to zero.

getFaceWeightVariable()

Pointer< FaceVariable< NDIM, double > > IBTK::HierarchyMathOps::getFaceWeightVariable

(

)

const

Access the SAMRAI::pdat::FaceVariable that is used to store face weights. These weights are used in computing discrete vector norms.

If a face is not refined in the hierarchy, its weight is set to its volume. If a face is refined, its weight is set to zero.

getSideWeightPatchDescriptorIndex()

int IBTK::HierarchyMathOps::getSideWeightPatchDescriptorIndex

(

)

Access the patch descriptor index that corresponds to the SAMRAI::pdat::SideVariable that is used to store side weights. These weights are used in computing discrete vector norms.

If a side is not refined in the hierarchy, its weight is set to its volume. If a side is refined, its weight is set to zero.

getSideWeightVariable()

Pointer< SideVariable< NDIM, double > > IBTK::HierarchyMathOps::getSideWeightVariable

(

)

const

Access the SAMRAI::pdat::SideVariable that is used to store side weights. These weights are used in computing discrete vector norms.

If a side is not refined in the hierarchy, its weight is set to its volume. If a side is refined, its weight is set to zero.

grad() [1/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences.

See also

setPatchHierarchy

resetLevels

grad() [2/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences.

See also

setPatchHierarchy

resetLevels

grad() [3/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences.

See also

setPatchHierarchy

resetLevels

grad() [4/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

See also

setPatchHierarchy

resetLevels

grad() [5/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

Note

Homogeneous Neumann boundary conditions are explicitly enforced in the case of non-grid aligned anisotropy.

See also

setPatchHierarchy

resetLevels

grad() [6/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

See also

setPatchHierarchy

resetLevels

grad() [7/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Compute the gradient of a scalar quantity using centered differences.

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

Note

Homogeneous Neumann boundary conditions are explicitly enforced in the case of non-grid aligned anisotropy.

See also

setPatchHierarchy

resetLevels

harmonic_interp() [1/3]

void IBTK::HierarchyMathOps::harmonic_interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Harmonically interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

See also

setPatchHierarchy

resetLevels

harmonic_interp() [2/3]

void IBTK::HierarchyMathOps::harmonic_interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Harmonically interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the node centered variable are computed as averages of the cell centered variable

See also

setPatchHierarchy

resetLevels

harmonic_interp() [3/3]

void IBTK::HierarchyMathOps::harmonic_interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Harmonically interpolate to a side-centered normal vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) harmonic averaging. When the interpolation occurs over multiple levels of the hierarchy, second order interpolation is used at the coarse-fine interface to correct fine values along the interface. When specified, coarse values on each coarse-fine interface are synchronized after performing the interpolation.

See also

setPatchHierarchy

resetLevels

harmonic_interp_ghosted() [1/2]

void IBTK::HierarchyMathOps::harmonic_interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Harmonically interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

harmonic_interp_ghosted() [2/2]

void IBTK::HierarchyMathOps::harmonic_interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Harmonically interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the node centered variable are computed as averages of the cell centered variable

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

interp() [1/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate to a cell-centered vector/tensor field from an edge-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

See also

setPatchHierarchy

resetLevels

interp() [2/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate to a cell-centered vector/tensor field from a face-centered normal vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [3/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate to a cell-centered vector/tensor field from a node-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

See also

setPatchHierarchy

resetLevels

interp() [4/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate to a cell-centered vector/tensor field from a side-centered normal vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [5/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

See also

setPatchHierarchy

resetLevels

interp() [6/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate to a face-centered normal vector/tensor field from a cell-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When the interpolation occurs over over multiple levels of the hierarchy, second order interpolation is used at the coarse-fine interface to correct fine values along the interface. When specified, coarse values on each coarse-fine interface are synchronized after performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [7/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

See also

setPatchHierarchy

resetLevels

interp() [8/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate to a node-centered vector/tensor field from a face-centered normal vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [9/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate to a node-centered vector/tensor field from a side-centered normal vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [10/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate to a side-centered normal vector/tensor field from a cell-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When the interpolation occurs over multiple levels of the hierarchy, second order interpolation is used at the coarse-fine interface to correct fine values along the interface. When specified, coarse values on each coarse-fine interface are synchronized after performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp_ghosted() [1/2]

void IBTK::HierarchyMathOps::interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

interp_ghosted() [2/2]

void IBTK::HierarchyMathOps::interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. Interpolate both in the cell and in the ghost region.

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

laplace() [1/2]

void IBTK::HierarchyMathOps::laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		const SAMRAI::solv::PoissonSpecifications &	poisson_spec,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

Compute the Laplacian of a scalar quantity using centered differences.

Sets dst = C src1 + div D grad src1 + gamma src2.

Compute the Laplacian of a scalar quantity using centered differences, where C and D are specified by the SAMRAI::solv::PoissonSpecifications object poisson_spec. When the operation is being performed on multiple levels of the hierarchy, the appropriately synchronized gradient and divergence operators are employed to obtain a consistent discretization of the Laplace operator.

See also

setPatchHierarchy

resetLevels

laplace() [2/2]

void IBTK::HierarchyMathOps::laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		const SAMRAI::solv::PoissonSpecifications &	poisson_spec,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr
	)

Compute the Laplacian of a scalar quantity using centered differences.

Sets dst = C src1 + div D grad src1 + gamma src2.

Compute the Laplacian of a scalar quantity using centered differences, where C and D are specified by the SAMRAI::solv::PoissonSpecifications object poisson_spec.

Note

The present implementation of this operator requires that damping factor C and diffusivity D be spatially constant and scalar-valued.

See also

setPatchHierarchy

resetLevels

pointwiseL1Norm() [1/2]

void IBTK::HierarchyMathOps::pointwiseL1Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var
	)

Compute dst = |src|_1, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseL1Norm() [2/2]

void IBTK::HierarchyMathOps::pointwiseL1Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var
	)

Compute dst = |src|_1, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseL2Norm() [1/2]

void IBTK::HierarchyMathOps::pointwiseL2Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var
	)

Compute dst = |src|_2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseL2Norm() [2/2]

void IBTK::HierarchyMathOps::pointwiseL2Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var
	)

Compute dst = |src|_2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMaxNorm() [1/2]

void IBTK::HierarchyMathOps::pointwiseMaxNorm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var
	)

Compute dst = |src|_oo, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMaxNorm() [2/2]

void IBTK::HierarchyMathOps::pointwiseMaxNorm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var
	)

Compute dst = |src|_oo, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [1/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [2/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [3/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [4/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [5/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [6/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [7/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [8/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [9/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [10/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [11/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [12/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

Compute dst = alpha src1 + beta src2, pointwise.

See also

setPatchHierarchy

resetLevels

resetLevels()

void IBTK::HierarchyMathOps::resetLevels	(	int	coarsest_ln,
		int	finest_ln
	)

Reset range of patch levels over which operations occur.

The specified levels must exist in the hierarchy or an assertion will result.

rot() [1/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector<SAMRAI::solv::RobinBcCoefStrategy<NDIM>*>()
	)

Compute the side-centered rot of a node-centered scalar field using centered differences.

Sets dst = rot src.

Compute the rot of a 2d scalar field defined on nodes using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [2/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector<SAMRAI::solv::RobinBcCoefStrategy<NDIM>*>()
	)

Compute the side-centered rot of a edge-centered vector field using centered differences.

Sets dst = rot src.

Compute the rot of a 3d vector field defined on edges using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [3/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector<SAMRAI::solv::RobinBcCoefStrategy<NDIM>*>()
	)

Compute the side-centered rot of a node-centered scalar field using centered differences.

Sets dst = rot src.

Compute the rot of a 2d scalar field defined on nodes using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [4/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector<SAMRAI::solv::RobinBcCoefStrategy<NDIM>*>()
	)

Compute the side-centered rot of a side-centered vector field using centered differences.

Sets dst = rot src.

Compute the rot of a 3d vector field defined on sides using centered differences.

See also

setPatchHierarchy

resetLevels

strain_rate() [1/2]

void IBTK::HierarchyMathOps::strain_rate	(	int	dst1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst1_var,
		int	dst2_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst2_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered strain rate of a side-centered vector field using centered differences.

Sets dst1 = strain src (diagonal components). Sets dst2 = strain src (off diagonal components).

Compute the strain of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

strain_rate() [2/2]

void IBTK::HierarchyMathOps::strain_rate	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Compute the cell-centered strain rate of a side-centered vector field using centered differences.

Sets dst = strain src.

Compute the strain of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

vc_laplace() [1/2]

void IBTK::HierarchyMathOps::vc_laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		double	alpha,
		double	beta,
		int	coef1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	coef1_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		IBTK::VCInterpType	coef1_interp_type = VC_HARMONIC_INTERP,
		int	coef2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	coef2_var = nullptr,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr
	)

Compute dst = alpha div coef1 ((grad src1) + (grad src1)^T) + beta coef2 src1 + gamma src2, the variable coefficient generalized Laplacian of src1.

Note

This routine is only appropriate for NDIM == 3 and uses edge centered coef1. Interally, coef1 will be interpolated onto cell centers when needed. Harmonic interpolation is used by default, but coef1_interp_type = VC_AVERAGE_INTERP will apply arithmetic averaging from edges to cells

See also

setPatchHierarchy

resetLevels

vc_laplace() [2/2]

void IBTK::HierarchyMathOps::vc_laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		double	alpha,
		double	beta,
		int	coef1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	coef1_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		IBTK::VCInterpType	coef1_interp_type = VC_HARMONIC_INTERP,
		int	coef2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	coef2_var = nullptr,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr
	)

Compute dst = alpha div coef1 ((grad src1) + (grad src1)^T) + beta coef2 src1 + gamma src2, the variable coefficient generalized Laplacian of src1.

Note

This routine is only appropriate for NDIM == 2 and uses node centered coef1. Interally, coef1 will be interpolated onto cell centers when needed. Harmonic interpolation is used by default, but coef1_interp_type = VC_AVERAGE_INTERP will apply arithmetic averaging from nodes to cells

See also

setPatchHierarchy

resetLevels

---

The documentation for this class was generated from the following files:

• /home/runner/work/IBAMR/IBAMR/ibtk/include/ibtk/HierarchyMathOps.h
• /home/runner/work/IBAMR/IBAMR/ibtk/src/math/HierarchyMathOps.cpp