| computeGlobalNodeCountOnPatchLevel(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time) override | IBAMR::IBRedundantInitializer | virtual |
| computeLocalNodeCountOnPatchLevel(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time) override | IBAMR::IBRedundantInitializer | virtual |
| d_anchor_spec_data | IBAMR::IBRedundantInitializer | protected |
| d_base_filename | IBAMR::IBStandardInitializer | private |
| d_bdry_mass_spec_data | IBAMR::IBRedundantInitializer | protected |
| d_beam_spec_data | IBAMR::IBRedundantInitializer | protected |
| d_data_processed | IBAMR::IBRedundantInitializer | protected |
| d_directors | IBAMR::IBRedundantInitializer | protected |
| d_enable_anchor_points | IBAMR::IBStandardInitializer | private |
| d_enable_bdry_mass | IBAMR::IBStandardInitializer | private |
| d_enable_beams | IBAMR::IBStandardInitializer | private |
| d_enable_instrumentation | IBAMR::IBStandardInitializer | private |
| d_enable_rods | IBAMR::IBStandardInitializer | private |
| d_enable_sources | IBAMR::IBStandardInitializer | private |
| d_enable_springs | IBAMR::IBStandardInitializer | private |
| d_enable_target_points | IBAMR::IBStandardInitializer | private |
| d_enable_xsprings | IBAMR::IBStandardInitializer | private |
| d_global_index_offset | IBAMR::IBRedundantInitializer | protected |
| d_init_anchor_pt_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_anchor_pt_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_beam_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_beam_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_boundary_mass_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_boundary_mass_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_director_and_rod_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_director_and_rod_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_instrumentation_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_instrumentation_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_source_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_source_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_spring_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_spring_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_structure_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_structure_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_target_pt_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_target_pt_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_init_xspring_on_level_ctx | IBAMR::IBRedundantInitializer | private |
| d_init_xspring_on_level_fcn | IBAMR::IBRedundantInitializer | private |
| d_instrument_idx | IBAMR::IBRedundantInitializer | protected |
| d_length_scale_factor | IBAMR::IBStandardInitializer | private |
| d_level_is_initialized | IBAMR::IBStandardInitializer | private |
| d_max_levels | IBAMR::IBStandardInitializer | private |
| d_num_vertex | IBAMR::IBRedundantInitializer | protected |
| d_object_name | IBAMR::IBRedundantInitializer | protected |
| d_posn_shift | IBAMR::IBStandardInitializer | private |
| d_rod_edge_map | IBAMR::IBRedundantInitializer | protected |
| d_rod_spec_data | IBAMR::IBRedundantInitializer | protected |
| d_silo_writer | IBAMR::IBStandardInitializer | private |
| d_source_idx | IBAMR::IBRedundantInitializer | protected |
| d_spring_edge_map | IBAMR::IBRedundantInitializer | protected |
| d_spring_spec_data | IBAMR::IBRedundantInitializer | protected |
| d_target_spec_data | IBAMR::IBRedundantInitializer | protected |
| d_uniform_bdry_mass | IBAMR::IBStandardInitializer | private |
| d_uniform_bdry_mass_stiffness | IBAMR::IBStandardInitializer | private |
| d_uniform_beam_bend_rigidity | IBAMR::IBStandardInitializer | private |
| d_uniform_beam_curvature | IBAMR::IBStandardInitializer | private |
| d_uniform_rod_properties | IBAMR::IBStandardInitializer | private |
| d_uniform_spring_force_fcn_idx | IBAMR::IBStandardInitializer | private |
| d_uniform_spring_rest_length | IBAMR::IBStandardInitializer | private |
| d_uniform_spring_stiffness | IBAMR::IBStandardInitializer | private |
| d_uniform_target_damping | IBAMR::IBStandardInitializer | private |
| d_uniform_target_stiffness | IBAMR::IBStandardInitializer | private |
| d_uniform_xspring_force_fcn_idx | IBAMR::IBStandardInitializer | private |
| d_uniform_xspring_rest_length | IBAMR::IBStandardInitializer | private |
| d_uniform_xspring_stiffness | IBAMR::IBStandardInitializer | private |
| d_use_file_batons | IBAMR::IBStandardInitializer | private |
| d_using_uniform_bdry_mass | IBAMR::IBStandardInitializer | private |
| d_using_uniform_bdry_mass_stiffness | IBAMR::IBStandardInitializer | private |
| d_using_uniform_beam_bend_rigidity | IBAMR::IBStandardInitializer | private |
| d_using_uniform_beam_curvature | IBAMR::IBStandardInitializer | private |
| d_using_uniform_rod_properties | IBAMR::IBStandardInitializer | private |
| d_using_uniform_spring_force_fcn_idx | IBAMR::IBStandardInitializer | private |
| d_using_uniform_spring_rest_length | IBAMR::IBStandardInitializer | private |
| d_using_uniform_spring_stiffness | IBAMR::IBStandardInitializer | private |
| d_using_uniform_target_damping | IBAMR::IBStandardInitializer | private |
| d_using_uniform_target_stiffness | IBAMR::IBStandardInitializer | private |
| d_using_uniform_xspring_force_fcn_idx | IBAMR::IBStandardInitializer | private |
| d_using_uniform_xspring_rest_length | IBAMR::IBStandardInitializer | private |
| d_using_uniform_xspring_stiffness | IBAMR::IBStandardInitializer | private |
| d_vertex_offset | IBAMR::IBRedundantInitializer | protected |
| d_vertex_posn | IBAMR::IBRedundantInitializer | protected |
| d_xspring_edge_map | IBAMR::IBRedundantInitializer | protected |
| d_xspring_spec_data | IBAMR::IBRedundantInitializer | protected |
| Edge typedef | IBAMR::IBRedundantInitializer | |
| getCanonicalLagrangianIndex(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getFromInput(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) | IBAMR::IBStandardInitializer | private |
| getIsAllLagrangianDataInDomain(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) const override | IBAMR::IBRedundantInitializer | virtual |
| getLevelHasLagrangianData(int level_number, bool can_be_refined) const override | IBAMR::IBRedundantInitializer | virtual |
| getPatchVertices(std::vector< std::pair< int, int > > &point_indices, SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) const | IBAMR::IBRedundantInitializer | protected |
| getPatchVerticesAtLevel(std::vector< std::pair< int, int > > &point_indices, SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getShiftedVertexPosn(const std::pair< int, int > &point_index, int level_number, const double *domain_x_lower, const double *domain_x_upper, const SAMRAI::hier::IntVector< NDIM > &periodic_shift) const | IBAMR::IBRedundantInitializer | protected |
| getVertexAnchorSpec(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getVertexBdryMassSpec(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getVertexDirectors(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getVertexInstrumentationIndices(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getVertexPosn(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getVertexSourceIndices(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| getVertexTargetSpec(const std::pair< int, int > &point_index, int level_number) const | IBAMR::IBRedundantInitializer | protected |
| IBRedundantInitializer(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::IBRedundantInitializer | |
| IBRedundantInitializer() | IBAMR::IBRedundantInitializer | protected |
| IBRedundantInitializer(const IBRedundantInitializer &from)=delete | IBAMR::IBRedundantInitializer | protected |
| IBStandardInitializer(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | IBAMR::IBStandardInitializer | |
| IBStandardInitializer()=delete | IBAMR::IBStandardInitializer | private |
| IBStandardInitializer(const IBStandardInitializer &from)=delete | IBAMR::IBStandardInitializer | private |
| init() override | IBAMR::IBStandardInitializer | virtual |
| InitAnchorPtOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitBeamDataOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitBoundaryMassOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitDirectorAndRodOnLevel typedef | IBAMR::IBRedundantInitializer | |
| initializeAnchorPts() | IBAMR::IBRedundantInitializer | protected |
| initializeBeams() | IBAMR::IBRedundantInitializer | protected |
| initializeBoundaryMass() | IBAMR::IBRedundantInitializer | protected |
| initializeDataOnPatchLevel(int lag_node_index_idx, unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > X_data, SAMRAI::tbox::Pointer< IBTK::LData > U_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
| initializeDirectorAndRods() | IBAMR::IBRedundantInitializer | protected |
| initializeDirectorDataOnPatchLevel(unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > D_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
| initializeInstrumentationData() | IBAMR::IBRedundantInitializer | protected |
| initializeLSiloDataWriter(int level_number) | IBAMR::IBRedundantInitializer | protected |
| initializeMassDataOnPatchLevel(unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > M_data, SAMRAI::tbox::Pointer< IBTK::LData > K_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
| initializeNodeData(const std::pair< int, int > &point_index, unsigned int global_index_offset, int level_number) const override | IBAMR::IBStandardInitializer | privatevirtual |
| initializeSourceData() | IBAMR::IBRedundantInitializer | protected |
| initializeSprings() | IBAMR::IBRedundantInitializer | protected |
| initializeStructureIndexingOnPatchLevel(std::map< int, std::string > &strct_id_to_strct_name_map, std::map< int, std::pair< int, int > > &strct_id_to_lag_idx_range_map, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override | IBAMR::IBRedundantInitializer | virtual |
| initializeStructurePosition() | IBAMR::IBRedundantInitializer | protected |
| initializeTargetPts() | IBAMR::IBRedundantInitializer | protected |
| initializeXSprings() | IBAMR::IBRedundantInitializer | protected |
| InitInstrumentationOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitSourceOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitSpringDataOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitStructureOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitTargetPtOnLevel typedef | IBAMR::IBRedundantInitializer | |
| InitXSpringDataOnLevel typedef | IBAMR::IBRedundantInitializer | |
| LInitStrategy()=default | IBTK::LInitStrategy | |
| LInitStrategy(const LInitStrategy &from)=delete | IBTK::LInitStrategy | private |
| operator=(const IBStandardInitializer &that)=delete | IBAMR::IBStandardInitializer | private |
| IBAMR::IBRedundantInitializer::operator=(const IBRedundantInitializer &that)=delete | IBAMR::IBRedundantInitializer | protected |
| readAnchorPointFiles(const std::string &file_extension) | IBAMR::IBStandardInitializer | private |
| readBeamFiles(const std::string &file_extension, bool input_uses_global_idxs) | IBAMR::IBStandardInitializer | private |
| readBoundaryMassFiles(const std::string &file_extension) | IBAMR::IBStandardInitializer | private |
| readDirectorFiles(const std::string &file_extension) | IBAMR::IBStandardInitializer | private |
| readInstrumentationFiles(const std::string &file_extension) | IBAMR::IBStandardInitializer | private |
| readRodFiles(const std::string &file_extension, bool input_uses_global_idxs) | IBAMR::IBStandardInitializer | private |
| readSourceFiles(const std::string &file_extension) | IBAMR::IBStandardInitializer | private |
| readSpringFiles(const std::string &file_extension, bool input_uses_global_idxs) | IBAMR::IBStandardInitializer | private |
| readTargetPointFiles(const std::string &file_extension) | IBAMR::IBStandardInitializer | private |
| readVertexFiles(const std::string &extension) | IBAMR::IBStandardInitializer | private |
| readXSpringFiles(const std::string &file_extension, bool input_uses_global_idxs) | IBAMR::IBStandardInitializer | private |
| registerInitAnchorPtFunction(InitAnchorPtOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitBeamDataFunction(InitBeamDataOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitBoundaryMassFunction(InitBoundaryMassOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitDirectorAndRodFunction(InitDirectorAndRodOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitInstrumentationFunction(InitInstrumentationOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitSourceFunction(InitSourceOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitSpringDataFunction(InitSpringDataOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitStructureFunction(InitStructureOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitTargetPtFunction(InitTargetPtOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerInitXSpringDataFunction(InitXSpringDataOnLevel fcn, void *ctx=nullptr) | IBAMR::IBRedundantInitializer | |
| registerLSiloDataWriter(SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter > silo_writer) | IBAMR::IBRedundantInitializer | |
| setStructureNamesOnLevel(const int &level_num, const std::vector< std::string > &strct_names) | IBAMR::IBRedundantInitializer | |
| tagCellsForInitialRefinement(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index) override | IBAMR::IBRedundantInitializer | virtual |
| ~DescribedClass() | SAMRAI::tbox::DescribedClass | virtual |
| ~IBRedundantInitializer() | IBAMR::IBRedundantInitializer | virtual |
| ~IBStandardInitializer() | IBAMR::IBStandardInitializer | |
| ~LInitStrategy()=default | IBTK::LInitStrategy | virtual |
