Class IBRedundantInitializer is an abstract LInitStrategy that initializes the configuration of one or more Lagrangian structures from input files. More...

#include <ibamr/IBRedundantInitializer.h>

Inheritance diagram for IBAMR::IBRedundantInitializer:

[legend]

Classes
struct	AnchorSpec

struct	BdryMassSpec

struct	BeamSpec

struct	EdgeComp

struct	RodSpec

struct	SpringSpec

struct	TargetSpec

struct	XSpringSpec

Public Types
using	InitStructureOnLevel = void()(const unsigned int &strct_num, const int &level_num, int &num_vertices, std::vector< IBTK::Point > &vertex_posn, void ctx)

using	Edge = std::pair< int, int >

using	InitSpringDataOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::multimap< int, Edge > &spring_map, std::map< Edge, SpringSpec, EdgeComp > &spring_spec, void ctx)

using	InitXSpringDataOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::multimap< int, Edge > &xspring_map, std::map< Edge, XSpringSpec, EdgeComp > xspring_spec, void ctx)

using	InitBeamDataOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::multimap< int, BeamSpec > &beam_spec, void ctx)

using	InitDirectorAndRodOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::vector< std::vector< double > > &director_spec, std::multimap< int, Edge > &rod_edge_map, std::map< Edge, RodSpec, EdgeComp > &rod_spec, void ctx)

using	InitBoundaryMassOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::multimap< int, BdryMassSpec > &bdry_mass_spec, void ctx)

using	InitTargetPtOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::multimap< int, TargetSpec > &tg_pt_spec, void ctx)

using	InitAnchorPtOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::multimap< int, AnchorSpec > &anchor_pt_spec, void ctx)

using	InitInstrumentationOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::vector< std::string > &instrument_name, std::map< int, std::pair< int, int > > &instrument_spec, void ctx)

using	InitSourceOnLevel = void()(const unsigned int &strct_num, const int &level_num, std::map< int, int > &source_spec, std::vector< std::string > &source_names, std::vector< double > &source_radii, void ctx)

Public Member Functions
	IBRedundantInitializer (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db)
	Constructor. More...

virtual	~IBRedundantInitializer ()
	Destructor. More...

void	registerLSiloDataWriter (SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter > silo_writer)
	Register a Silo data writer with the IB initializer object. More...

bool	getLevelHasLagrangianData (int level_number, bool can_be_refined) const override
	Determine whether there are any Lagrangian nodes on the specified patch level. More...

bool	getIsAllLagrangianDataInDomain (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) const override

unsigned int	computeGlobalNodeCountOnPatchLevel (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time) override
	Determine the number of global nodes on the specified patch level. More...

unsigned int	computeLocalNodeCountOnPatchLevel (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time) override
	Determine the number of local nodes on the specified patch level. More...

void	registerInitStructureFunction (InitStructureOnLevel fcn, void *ctx=nullptr)

void	registerInitSpringDataFunction (InitSpringDataOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize spring data structures on a given level. More...

void	registerInitXSpringDataFunction (InitXSpringDataOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize xspring data structures on a given level. More...

void	registerInitBeamDataFunction (InitBeamDataOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize beam data structures on a given level. More...

void	registerInitDirectorAndRodFunction (InitDirectorAndRodOnLevel fcn, void *ctx=nullptr)
	Register a funcion to initialize director and rod data structures on a given level. More...

void	registerInitBoundaryMassFunction (InitBoundaryMassOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize massive points on a given level. More...

void	registerInitTargetPtFunction (InitTargetPtOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize target points on a given level. More...

void	registerInitAnchorPtFunction (InitAnchorPtOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize anchor points on a given level. More...

void	registerInitInstrumentationFunction (InitInstrumentationOnLevel fcn, void *ctx=nullptr)
	Register a function to initialize instrumentation data on a given level. More...

void	registerInitSourceFunction (InitSourceOnLevel fcn, void *ctx=nullptr)
	Register a funciton to initialize source/sink data on a given level. More...

void	initializeStructureIndexingOnPatchLevel (std::map< int, std::string > &strct_id_to_strct_name_map, std::map< int, std::pair< int, int > > &strct_id_to_lag_idx_range_map, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override
	Initialize the structure indexing information on the patch level. More...

unsigned int	initializeDataOnPatchLevel (int lag_node_index_idx, unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > X_data, SAMRAI::tbox::Pointer< IBTK::LData > U_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override
	Initialize the LNode and LData data needed to specify the configuration of the curvilinear mesh on the patch level. More...

unsigned int	initializeMassDataOnPatchLevel (unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > M_data, SAMRAI::tbox::Pointer< IBTK::LData > K_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override
	Initialize the LData needed to specify the mass and spring constant data required by the penalty IB method. More...

unsigned int	initializeDirectorDataOnPatchLevel (unsigned int global_index_offset, unsigned int local_index_offset, SAMRAI::tbox::Pointer< IBTK::LData > D_data, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, IBTK::LDataManager *l_data_manager) override
	Initialize the LNode data needed to specify director vectors required by some material models. More...

void	tagCellsForInitialRefinement (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index) override
	Tag cells for initial refinement. More...

void	setStructureNamesOnLevel (const int &level_num, const std::vector< std::string > &strct_names)
	Set the names of the structures on a given level. More...

virtual void	init () override
	Initialize structure specific configurations. More...

Protected Member Functions
	IBRedundantInitializer ()
	Default constructor. More...

	IBRedundantInitializer (const IBRedundantInitializer &from)=delete
	Copy constructor. More...

IBRedundantInitializer &	operator= (const IBRedundantInitializer &that)=delete
	Assignment operator. More...

void	initializeLSiloDataWriter (int level_number)
	Configure the Lagrangian Silo data writer to plot the data associated with the specified level of the locally refined Cartesian grid. More...

void	initializeStructurePosition ()
	Initialize vertex data programmatically. More...

void	initializeSprings ()
	Initialize spring data programmatically. More...

void	initializeXSprings ()
	Initialize xspring data programmatically. More...

void	initializeBeams ()
	Initialize beam data programmatically. More...

void	initializeDirectorAndRods ()
	Initialize director and rod data programmatically. More...

void	initializeBoundaryMass ()
	Initialize massive point data programmatically. More...

void	initializeTargetPts ()
	Initialize target point data programmatically. More...

void	initializeAnchorPts ()
	Initialize anchor points programmatically. More...

void	initializeInstrumentationData ()
	Initialize instrumentation data. More...

void	initializeSourceData ()
	Initialize source/sink data. More...

void	getPatchVertices (std::vector< std::pair< int, int > > &point_indices, SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) const
	Determine the indices of any vertices initially owned by the specified patch. More...

void	getPatchVerticesAtLevel (std::vector< std::pair< int, int > > &point_indices, SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int level_number) const
	Determine the indices of any vertices associated with a given level number initially located within the specified patch. More...

int	getCanonicalLagrangianIndex (const std::pair< int, int > &point_index, int level_number) const

IBTK::Point	getVertexPosn (const std::pair< int, int > &point_index, int level_number) const

IBTK::Point	getShiftedVertexPosn (const std::pair< int, int > &point_index, int level_number, const double domain_x_lower, const double domain_x_upper, const SAMRAI::hier::IntVector< NDIM > &periodic_shift) const

const TargetSpec &	getVertexTargetSpec (const std::pair< int, int > &point_index, int level_number) const

const AnchorSpec &	getVertexAnchorSpec (const std::pair< int, int > &point_index, int level_number) const

const BdryMassSpec &	getVertexBdryMassSpec (const std::pair< int, int > &point_index, int level_number) const

const std::vector< double > &	getVertexDirectors (const std::pair< int, int > &point_index, int level_number) const

std::pair< int, int >	getVertexInstrumentationIndices (const std::pair< int, int > &point_index, int level_number) const

int	getVertexSourceIndices (const std::pair< int, int > &point_index, int level_number) const

virtual std::vector< SAMRAI::tbox::Pointer< IBTK::Streamable > >	initializeNodeData (const std::pair< int, int > &point_index, unsigned int global_index_offset, int level_number) const

void	getFromInput (SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db)

Protected Attributes
std::string	d_object_name

int	d_max_levels = -1

std::vector< bool >	d_level_is_initialized

SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter >	d_silo_writer

std::vector< std::vector< std::string > >	d_base_filename

double	d_length_scale_factor = 1.0

IBTK::Vector	d_posn_shift

std::vector< std::vector< int > >	d_num_vertex

std::vector< std::vector< int > >	d_vertex_offset

std::vector< std::vector< std::vector< IBTK::Point > > >	d_vertex_posn

std::vector< std::vector< std::multimap< int, Edge > > >	d_spring_edge_map

std::vector< std::vector< std::map< Edge, SpringSpec, EdgeComp > > >	d_spring_spec_data

std::vector< std::vector< std::multimap< int, Edge > > >	d_xspring_edge_map

std::vector< std::vector< std::map< Edge, XSpringSpec, EdgeComp > > >	d_xspring_spec_data

std::vector< std::vector< std::multimap< int, BeamSpec > > >	d_beam_spec_data

std::vector< std::vector< std::multimap< int, Edge > > >	d_rod_edge_map

std::vector< std::vector< std::map< Edge, RodSpec, EdgeComp > > >	d_rod_spec_data

std::vector< std::vector< std::vector< TargetSpec > > >	d_target_spec_data

std::vector< std::vector< std::vector< AnchorSpec > > >	d_anchor_spec_data

std::vector< std::vector< std::vector< BdryMassSpec > > >	d_bdry_mass_spec_data

std::vector< std::vector< std::vector< std::vector< double > > > >	d_directors

std::vector< std::vector< std::map< int, std::pair< int, int > > > >	d_instrument_idx

std::vector< std::vector< std::map< int, int > > >	d_source_idx

std::vector< unsigned int >	d_global_index_offset

bool	d_data_processed = false

Private Attributes
InitStructureOnLevel	d_init_structure_on_level_fcn = nullptr

void *	d_init_structure_on_level_ctx = nullptr

InitSpringDataOnLevel	d_init_spring_on_level_fcn = nullptr

void *	d_init_spring_on_level_ctx = nullptr

InitXSpringDataOnLevel	d_init_xspring_on_level_fcn = nullptr

void *	d_init_xspring_on_level_ctx = nullptr

InitBeamDataOnLevel	d_init_beam_on_level_fcn = nullptr

void *	d_init_beam_on_level_ctx = nullptr

InitDirectorAndRodOnLevel	d_init_director_and_rod_on_level_fcn = nullptr

void *	d_init_director_and_rod_on_level_ctx = nullptr

InitBoundaryMassOnLevel	d_init_boundary_mass_on_level_fcn = nullptr

void *	d_init_boundary_mass_on_level_ctx = nullptr

InitTargetPtOnLevel	d_init_target_pt_on_level_fcn = nullptr

void *	d_init_target_pt_on_level_ctx = nullptr

InitAnchorPtOnLevel	d_init_anchor_pt_on_level_fcn = nullptr

void *	d_init_anchor_pt_on_level_ctx = nullptr

InitInstrumentationOnLevel	d_init_instrumentation_on_level_fcn = nullptr

void *	d_init_instrumentation_on_level_ctx = nullptr

InitSourceOnLevel	d_init_source_on_level_fcn = nullptr

void *	d_init_source_on_level_ctx = nullptr

Detailed Description

Todo:: Document input database entries.

Member Typedef Documentation

◆ InitStructureOnLevel

using IBAMR::IBRedundantInitializer::InitStructureOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, int& num_vertices, std::vector<IBTK::Point>& vertex_posn, void* ctx)

Typedef specifying the interface for initializing structures on a given level.

◆ Edge

using IBAMR::IBRedundantInitializer::Edge = std::pair<int, int>

◆ InitSpringDataOnLevel

using IBAMR::IBRedundantInitializer::InitSpringDataOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::multimap<int, Edge>& spring_map, std::map<Edge, SpringSpec, EdgeComp>& spring_spec, void* ctx)

Typedef specifying the interface for initializing springs on a given level.

spring_map should contain the map between the master point and the Edge of the spring. spring_spec should bw the map between the Edge and the SpringSpec.

◆ InitXSpringDataOnLevel

using IBAMR::IBRedundantInitializer::InitXSpringDataOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::multimap<int, Edge>& xspring_map, std::map<Edge, XSpringSpec, EdgeComp> xspring_spec, void* ctx)

Typedef specifying the interface for initializing xsprings on a given level.

xspring_map should contain the map between the master point and the Edge of the spring. xspring_spec should be the map between the Edge and the XSpringSpec.

◆ InitBeamDataOnLevel

using IBAMR::IBRedundantInitializer::InitBeamDataOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::multimap<int, BeamSpec>& beam_spec, void* ctx)

Typdef specifying the interface for initializing beams on a given level.

beam_spec should be the map between the master index and the corresponding BeamSpec.

◆ InitDirectorAndRodOnLevel

using IBAMR::IBRedundantInitializer::InitDirectorAndRodOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::vector<std::vector<double> >& director_spec, std::multimap<int, Edge>& rod_edge_map, std::map<Edge, RodSpec, EdgeComp>& rod_spec, void* ctx)

Typedef specifying the interface for initializing rods and director vectors on a given level.

director_spec should be a vector of the initial orthonormal director vectors. rod_edge_map should contain the map between the master point and the Edge of the rod. rod_spec should be the map between the Edge and the RodSpec.

◆ InitBoundaryMassOnLevel

using IBAMR::IBRedundantInitializer::InitBoundaryMassOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::multimap<int, BdryMassSpec>& bdry_mass_spec, void* ctx)

Typedef specifying the interface for initializing massive points on a given level.

bdry_mass_spec should be a map between indices and the corresponding BdryMassSpec.

◆ InitTargetPtOnLevel

using IBAMR::IBRedundantInitializer::InitTargetPtOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::multimap<int, TargetSpec>& tg_pt_spec, void* ctx)

Typedef specifying the interface for initializing target points on a given level.

tg_pt_spec should be a map between indices and the corresponding TargetSpec.

◆ InitAnchorPtOnLevel

using IBAMR::IBRedundantInitializer::InitAnchorPtOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::multimap<int, AnchorSpec>& anchor_pt_spec, void* ctx)

Typedef specifying the interface for initializing anchor points on a given level.

anchor_pt_spec should be a map between indices and the corresponding AnchorSpec.

◆ InitInstrumentationOnLevel

using IBAMR::IBRedundantInitializer::InitInstrumentationOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::vector<std::string>& instrument_name, std::map<int, std::pair<int, int> >& instrument_spec, void* ctx)

Typedef specifying the interface for initializing flow meters and pressure gauges on a given level.

instrument_name should be the list of names of the instruments. Note that instrument names and indices are global over all levels and structures. instrument_spec should be the map between the master index of the instrument and a pair of instrument number and node index. Note that this map is ordered.

◆ InitSourceOnLevel

using IBAMR::IBRedundantInitializer::InitSourceOnLevel = void (*)(const unsigned int& strct_num, const int& level_num, std::map<int, int>& source_spec, std::vector<std::string>& source_names, std::vector<double>& source_radii, void* ctx)

Constructor & Destructor Documentation

◆ IBRedundantInitializer() [1/3]

IBAMR::IBRedundantInitializer::IBRedundantInitializer	(	std::string	object_name,
		SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	input_db
	)

◆ ~IBRedundantInitializer()

virtual IBAMR::IBRedundantInitializer::~IBRedundantInitializer ( )

virtual

◆ IBRedundantInitializer() [2/3]

IBAMR::IBRedundantInitializer::IBRedundantInitializer ( )

protected

Note: This constructor is not implemented and should not be used.

◆ IBRedundantInitializer() [3/3]

IBAMR::IBRedundantInitializer::IBRedundantInitializer ( const IBRedundantInitializer & from )

protecteddelete

Note: This constructor is not implemented and should not be used.

Parameters

from	The value to copy to this object.

Member Function Documentation

◆ registerLSiloDataWriter()

void IBAMR::IBRedundantInitializer::registerLSiloDataWriter ( SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter > silo_writer )

◆ getLevelHasLagrangianData()

bool IBAMR::IBRedundantInitializer::getLevelHasLagrangianData	(	int	level_number,
		bool	can_be_refined
	)		const

overridevirtual

Returns: A boolean value indicating whether Lagrangian data is associated with the given level in the patch hierarchy.

Implements IBTK::LInitStrategy.

◆ getIsAllLagrangianDataInDomain()

bool IBAMR::IBRedundantInitializer::getIsAllLagrangianDataInDomain ( SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy ) const

overridevirtual

Returns: A boolean value indicating whether or not all Lagrangian data is within the computational domain specified by the patch hierarchy.

Implements IBTK::LInitStrategy.

◆ computeGlobalNodeCountOnPatchLevel()

unsigned int IBAMR::IBRedundantInitializer::computeGlobalNodeCountOnPatchLevel	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time
	)

overridevirtual

Returns: The number of global nodes on the specified level.

Implements IBTK::LInitStrategy.

◆ computeLocalNodeCountOnPatchLevel()

unsigned int IBAMR::IBRedundantInitializer::computeLocalNodeCountOnPatchLevel	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time
	)

overridevirtual

Returns: The number of local nodes on the specified level.

Implements IBTK::LInitStrategy.

◆ registerInitStructureFunction()

void IBAMR::IBRedundantInitializer::registerInitStructureFunction	(	InitStructureOnLevel	fcn,
		void *	ctx = `nullptr`
	)

Register the function to initialize a structure on a given level.

Note: A function must be registered or IBRedundantInitializer will return an error.

◆ registerInitSpringDataFunction()

void IBAMR::IBRedundantInitializer::registerInitSpringDataFunction	(	InitSpringDataOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitXSpringDataFunction()

void IBAMR::IBRedundantInitializer::registerInitXSpringDataFunction	(	InitXSpringDataOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitBeamDataFunction()

void IBAMR::IBRedundantInitializer::registerInitBeamDataFunction	(	InitBeamDataOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitDirectorAndRodFunction()

void IBAMR::IBRedundantInitializer::registerInitDirectorAndRodFunction	(	InitDirectorAndRodOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitBoundaryMassFunction()

void IBAMR::IBRedundantInitializer::registerInitBoundaryMassFunction	(	InitBoundaryMassOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitTargetPtFunction()

void IBAMR::IBRedundantInitializer::registerInitTargetPtFunction	(	InitTargetPtOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitAnchorPtFunction()

void IBAMR::IBRedundantInitializer::registerInitAnchorPtFunction	(	InitAnchorPtOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitInstrumentationFunction()

void IBAMR::IBRedundantInitializer::registerInitInstrumentationFunction	(	InitInstrumentationOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ registerInitSourceFunction()

void IBAMR::IBRedundantInitializer::registerInitSourceFunction	(	InitSourceOnLevel	fcn,
		void *	ctx = `nullptr`
	)

◆ initializeStructureIndexingOnPatchLevel()

void IBAMR::IBRedundantInitializer::initializeStructureIndexingOnPatchLevel	(	std::map< int, std::string > &	strct_id_to_strct_name_map,
		std::map< int, std::pair< int, int > > &	strct_id_to_lag_idx_range_map,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time,
		IBTK::LDataManager *	l_data_manager
	)

overridevirtual

Reimplemented from IBTK::LInitStrategy.

◆ initializeDataOnPatchLevel()

unsigned int IBAMR::IBRedundantInitializer::initializeDataOnPatchLevel	(	int	lag_node_index_idx,
		unsigned int	global_index_offset,
		unsigned int	local_index_offset,
		SAMRAI::tbox::Pointer< IBTK::LData >	X_data,
		SAMRAI::tbox::Pointer< IBTK::LData >	U_data,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time,
		IBTK::LDataManager *	l_data_manager
	)

overridevirtual

Returns: The number of local nodes initialized on the patch level.

Implements IBTK::LInitStrategy.

◆ initializeMassDataOnPatchLevel()

unsigned int IBAMR::IBRedundantInitializer::initializeMassDataOnPatchLevel	(	unsigned int	global_index_offset,
		unsigned int	local_index_offset,
		SAMRAI::tbox::Pointer< IBTK::LData >	M_data,
		SAMRAI::tbox::Pointer< IBTK::LData >	K_data,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time,
		IBTK::LDataManager *	l_data_manager
	)

overridevirtual

Returns: The number of local nodes initialized on the patch level.

Reimplemented from IBTK::LInitStrategy.

◆ initializeDirectorDataOnPatchLevel()

unsigned int IBAMR::IBRedundantInitializer::initializeDirectorDataOnPatchLevel	(	unsigned int	global_index_offset,
		unsigned int	local_index_offset,
		SAMRAI::tbox::Pointer< IBTK::LData >	D_data,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time,
		IBTK::LDataManager *	l_data_manager
	)

overridevirtual

Returns: The number of local nodes initialized on the patch level.

Reimplemented from IBTK::LInitStrategy.

◆ tagCellsForInitialRefinement()

void IBAMR::IBRedundantInitializer::tagCellsForInitialRefinement	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	error_data_time,
		int	tag_index
	)

overridevirtual

When the patch hierarchy is being constructed at the initial simulation time, it is necessary to instruct the gridding algorithm where to place local refinement in order to accommodate portions of the curvilinear mesh that will reside in any yet-to-be-constructed level(s) of the patch hierarchy.

Reimplemented from IBTK::LInitStrategy.

◆ setStructureNamesOnLevel()

void IBAMR::IBRedundantInitializer::setStructureNamesOnLevel	(	const int &	level_num,
		const std::vector< std::string > &	strct_names
	)

Note: The structure will be initialized in the same order as the supplied vector.

◆ init()

virtual void IBAMR::IBRedundantInitializer::init ( )

overridevirtual

Note: All functions should be registered with the object before init is called.

Reimplemented from IBTK::LInitStrategy.

Reimplemented in IBAMR::IBStandardInitializer.

◆ operator=()

IBRedundantInitializer& IBAMR::IBRedundantInitializer::operator= ( const IBRedundantInitializer & that )

protecteddelete

Note: This constructor is not implemented and should not be used.

Parameters

that	The value to assign to this object.

Returns: A reference to this object.

◆ initializeLSiloDataWriter()

void IBAMR::IBRedundantInitializer::initializeLSiloDataWriter ( int level_number )

protected

◆ initializeStructurePosition()

void IBAMR::IBRedundantInitializer::initializeStructurePosition ( )

protected

◆ initializeSprings()

void IBAMR::IBRedundantInitializer::initializeSprings ( )

protected

◆ initializeXSprings()

void IBAMR::IBRedundantInitializer::initializeXSprings ( )

protected

◆ initializeBeams()

void IBAMR::IBRedundantInitializer::initializeBeams ( )

protected

◆ initializeDirectorAndRods()

void IBAMR::IBRedundantInitializer::initializeDirectorAndRods ( )

protected

◆ initializeBoundaryMass()

void IBAMR::IBRedundantInitializer::initializeBoundaryMass ( )

protected

◆ initializeTargetPts()

void IBAMR::IBRedundantInitializer::initializeTargetPts ( )

protected

◆ initializeAnchorPts()

void IBAMR::IBRedundantInitializer::initializeAnchorPts ( )

protected

◆ initializeInstrumentationData()

void IBAMR::IBRedundantInitializer::initializeInstrumentationData ( )

protected

◆ initializeSourceData()

void IBAMR::IBRedundantInitializer::initializeSourceData ( )

protected

◆ getPatchVertices()

void IBAMR::IBRedundantInitializer::getPatchVertices	(	std::vector< std::pair< int, int > > &	point_indices,
		SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > >	patch,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy
	)		const

protected

◆ getPatchVerticesAtLevel()

void IBAMR::IBRedundantInitializer::getPatchVerticesAtLevel	(	std::vector< std::pair< int, int > > &	point_indices,
		SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > >	patch,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	level_number
	)		const

protected

◆ getCanonicalLagrangianIndex()

int IBAMR::IBRedundantInitializer::getCanonicalLagrangianIndex	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The canonical Lagrangian index of the specified vertex.

◆ getVertexPosn()

IBTK::Point IBAMR::IBRedundantInitializer::getVertexPosn	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The initial position of the specified vertex.

◆ getShiftedVertexPosn()

IBTK::Point IBAMR::IBRedundantInitializer::getShiftedVertexPosn	(	const std::pair< int, int > &	point_index,
		int	level_number,
		const double *	domain_x_lower,
		const double *	domain_x_upper,
		const SAMRAI::hier::IntVector< NDIM > &	periodic_shift
	)		const

protected

Returns: The initial position of the specified vertex.

◆ getVertexTargetSpec()

const TargetSpec& IBAMR::IBRedundantInitializer::getVertexTargetSpec	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The target point specifications associated with a particular node.

◆ getVertexAnchorSpec()

const AnchorSpec& IBAMR::IBRedundantInitializer::getVertexAnchorSpec	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The anchor point specifications associated with a particular node.

◆ getVertexBdryMassSpec()

const BdryMassSpec& IBAMR::IBRedundantInitializer::getVertexBdryMassSpec	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The massive boundary point specifications associated with a particular node.

◆ getVertexDirectors()

const std::vector<double>& IBAMR::IBRedundantInitializer::getVertexDirectors	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The directors associated with a particular node.

◆ getVertexInstrumentationIndices()

std::pair<int, int> IBAMR::IBRedundantInitializer::getVertexInstrumentationIndices	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The instrumentation indices associated with a particular node (or std::make_pair(-1,-1) if there is no instrumentation data associated with that node).

◆ getVertexSourceIndices()

int IBAMR::IBRedundantInitializer::getVertexSourceIndices	(	const std::pair< int, int > &	point_index,
		int	level_number
	)		const

protected

Returns: The source indices associated with a particular node (or -1 if there is no source data associated with that node).

◆ initializeNodeData()

virtual std::vector<SAMRAI::tbox::Pointer<IBTK::Streamable> > IBAMR::IBRedundantInitializer::initializeNodeData	(	const std::pair< int, int > &	point_index,
		unsigned int	global_index_offset,
		int	level_number
	)		const

protectedvirtual

Returns: The specification objects associated with the specified vertex.

Reimplemented in IBAMR::IBStandardInitializer.

◆ getFromInput()

void IBAMR::IBRedundantInitializer::getFromInput ( SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db )

protected

Read input values, indicated above, from given database.

When assertion checking is active, the database pointer must be non-null.

Member Data Documentation

◆ d_object_name

std::string IBAMR::IBRedundantInitializer::d_object_name

protected

◆ d_max_levels

int IBAMR::IBRedundantInitializer::d_max_levels = -1

protected

◆ d_level_is_initialized

std::vector<bool> IBAMR::IBRedundantInitializer::d_level_is_initialized

protected

◆ d_silo_writer

SAMRAI::tbox::Pointer<IBTK::LSiloDataWriter> IBAMR::IBRedundantInitializer::d_silo_writer

protected

◆ d_base_filename

std::vector<std::vector<std::string> > IBAMR::IBRedundantInitializer::d_base_filename

protected

◆ d_length_scale_factor

double IBAMR::IBRedundantInitializer::d_length_scale_factor = 1.0

protected

◆ d_posn_shift

IBTK::Vector IBAMR::IBRedundantInitializer::d_posn_shift

protected

◆ d_num_vertex

std::vector<std::vector<int> > IBAMR::IBRedundantInitializer::d_num_vertex

protected

◆ d_vertex_offset

std::vector<std::vector<int> > IBAMR::IBRedundantInitializer::d_vertex_offset

protected

◆ d_vertex_posn

std::vector<std::vector<std::vector<IBTK::Point> > > IBAMR::IBRedundantInitializer::d_vertex_posn

protected

◆ d_spring_edge_map

std::vector<std::vector<std::multimap<int, Edge> > > IBAMR::IBRedundantInitializer::d_spring_edge_map

protected

◆ d_spring_spec_data

std::vector<std::vector<std::map<Edge, SpringSpec, EdgeComp> > > IBAMR::IBRedundantInitializer::d_spring_spec_data

protected

◆ d_xspring_edge_map

std::vector<std::vector<std::multimap<int, Edge> > > IBAMR::IBRedundantInitializer::d_xspring_edge_map

protected

◆ d_xspring_spec_data

std::vector<std::vector<std::map<Edge, XSpringSpec, EdgeComp> > > IBAMR::IBRedundantInitializer::d_xspring_spec_data

protected

◆ d_beam_spec_data

std::vector<std::vector<std::multimap<int, BeamSpec> > > IBAMR::IBRedundantInitializer::d_beam_spec_data

protected

◆ d_rod_edge_map

std::vector<std::vector<std::multimap<int, Edge> > > IBAMR::IBRedundantInitializer::d_rod_edge_map

protected

◆ d_rod_spec_data

std::vector<std::vector<std::map<Edge, RodSpec, EdgeComp> > > IBAMR::IBRedundantInitializer::d_rod_spec_data

protected

◆ d_target_spec_data

std::vector<std::vector<std::vector<TargetSpec> > > IBAMR::IBRedundantInitializer::d_target_spec_data

protected

◆ d_anchor_spec_data

std::vector<std::vector<std::vector<AnchorSpec> > > IBAMR::IBRedundantInitializer::d_anchor_spec_data

protected

◆ d_bdry_mass_spec_data

std::vector<std::vector<std::vector<BdryMassSpec> > > IBAMR::IBRedundantInitializer::d_bdry_mass_spec_data

protected

◆ d_directors

std::vector<std::vector<std::vector<std::vector<double> > > > IBAMR::IBRedundantInitializer::d_directors

protected

◆ d_instrument_idx

std::vector<std::vector<std::map<int, std::pair<int, int> > > > IBAMR::IBRedundantInitializer::d_instrument_idx

protected

◆ d_source_idx

std::vector<std::vector<std::map<int, int> > > IBAMR::IBRedundantInitializer::d_source_idx

protected

◆ d_global_index_offset

std::vector<unsigned int> IBAMR::IBRedundantInitializer::d_global_index_offset

protected

◆ d_data_processed

bool IBAMR::IBRedundantInitializer::d_data_processed = false

protected

Check if user defined data has been processed.

◆ d_init_structure_on_level_fcn

InitStructureOnLevel IBAMR::IBRedundantInitializer::d_init_structure_on_level_fcn = nullptr

private

◆ d_init_structure_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_structure_on_level_ctx = nullptr

private

◆ d_init_spring_on_level_fcn

InitSpringDataOnLevel IBAMR::IBRedundantInitializer::d_init_spring_on_level_fcn = nullptr

private

◆ d_init_spring_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_spring_on_level_ctx = nullptr

private

◆ d_init_xspring_on_level_fcn

InitXSpringDataOnLevel IBAMR::IBRedundantInitializer::d_init_xspring_on_level_fcn = nullptr

private

◆ d_init_xspring_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_xspring_on_level_ctx = nullptr

private

◆ d_init_beam_on_level_fcn

InitBeamDataOnLevel IBAMR::IBRedundantInitializer::d_init_beam_on_level_fcn = nullptr

private

◆ d_init_beam_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_beam_on_level_ctx = nullptr

private

◆ d_init_director_and_rod_on_level_fcn

InitDirectorAndRodOnLevel IBAMR::IBRedundantInitializer::d_init_director_and_rod_on_level_fcn = nullptr

private

◆ d_init_director_and_rod_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_director_and_rod_on_level_ctx = nullptr

private

◆ d_init_boundary_mass_on_level_fcn

InitBoundaryMassOnLevel IBAMR::IBRedundantInitializer::d_init_boundary_mass_on_level_fcn = nullptr

private

◆ d_init_boundary_mass_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_boundary_mass_on_level_ctx = nullptr

private

◆ d_init_target_pt_on_level_fcn

InitTargetPtOnLevel IBAMR::IBRedundantInitializer::d_init_target_pt_on_level_fcn = nullptr

private

◆ d_init_target_pt_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_target_pt_on_level_ctx = nullptr

private

◆ d_init_anchor_pt_on_level_fcn

InitAnchorPtOnLevel IBAMR::IBRedundantInitializer::d_init_anchor_pt_on_level_fcn = nullptr

private

◆ d_init_anchor_pt_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_anchor_pt_on_level_ctx = nullptr

private

◆ d_init_instrumentation_on_level_fcn

InitInstrumentationOnLevel IBAMR::IBRedundantInitializer::d_init_instrumentation_on_level_fcn = nullptr

private

◆ d_init_instrumentation_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_instrumentation_on_level_ctx = nullptr

private

◆ d_init_source_on_level_fcn

InitSourceOnLevel IBAMR::IBRedundantInitializer::d_init_source_on_level_fcn = nullptr

private

◆ d_init_source_on_level_ctx

void* IBAMR::IBRedundantInitializer::d_init_source_on_level_ctx = nullptr

private

The documentation for this class was generated from the following file:

include/ibamr/IBRedundantInitializer.h

Classes

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Private Attributes

Detailed Description

Member Typedef Documentation

◆ InitStructureOnLevel

◆ Edge

◆ InitSpringDataOnLevel

◆ InitXSpringDataOnLevel

◆ InitBeamDataOnLevel

◆ InitDirectorAndRodOnLevel

◆ InitBoundaryMassOnLevel

◆ InitTargetPtOnLevel

◆ InitAnchorPtOnLevel

◆ InitInstrumentationOnLevel

◆ InitSourceOnLevel

Constructor & Destructor Documentation

◆ IBRedundantInitializer() [1/3]

◆ ~IBRedundantInitializer()

◆ IBRedundantInitializer() [2/3]

◆ IBRedundantInitializer() [3/3]

Member Function Documentation

◆ registerLSiloDataWriter()

◆ getLevelHasLagrangianData()

◆ getIsAllLagrangianDataInDomain()

◆ computeGlobalNodeCountOnPatchLevel()

◆ computeLocalNodeCountOnPatchLevel()

◆ registerInitStructureFunction()

◆ registerInitSpringDataFunction()

◆ registerInitXSpringDataFunction()

◆ registerInitBeamDataFunction()

◆ registerInitDirectorAndRodFunction()

◆ registerInitBoundaryMassFunction()

◆ registerInitTargetPtFunction()

◆ registerInitAnchorPtFunction()

◆ registerInitInstrumentationFunction()

◆ registerInitSourceFunction()

◆ initializeStructureIndexingOnPatchLevel()

◆ initializeDataOnPatchLevel()

◆ initializeMassDataOnPatchLevel()

◆ initializeDirectorDataOnPatchLevel()

◆ tagCellsForInitialRefinement()

◆ setStructureNamesOnLevel()

◆ init()

◆ operator=()

◆ initializeLSiloDataWriter()

◆ initializeStructurePosition()

◆ initializeSprings()

◆ initializeXSprings()

◆ initializeBeams()

◆ initializeDirectorAndRods()

◆ initializeBoundaryMass()

◆ initializeTargetPts()

◆ initializeAnchorPts()

◆ initializeInstrumentationData()

◆ initializeSourceData()

◆ getPatchVertices()

◆ getPatchVerticesAtLevel()

◆ getCanonicalLagrangianIndex()

◆ getVertexPosn()

◆ getShiftedVertexPosn()

◆ getVertexTargetSpec()

◆ getVertexAnchorSpec()

◆ getVertexBdryMassSpec()

◆ getVertexDirectors()

◆ getVertexInstrumentationIndices()

◆ getVertexSourceIndices()

◆ initializeNodeData()

◆ getFromInput()

Member Data Documentation

◆ d_object_name

◆ d_max_levels

◆ d_level_is_initialized

◆ d_silo_writer

◆ d_base_filename

◆ d_length_scale_factor

◆ d_posn_shift