IBAMR
An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method
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This is the complete list of members for IBAMR::IBInterpolantMethod, including all inherited members.
activateLagrangianStructure(int structure_number=0, int level_number=std::numeric_limits< int >::max()) | IBAMR::IBStrategy | virtual |
addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) override | IBAMR::IBInterpolantMethod | virtual |
advanceLevel(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBAMR::IBInterpolantMethod | virtual |
applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
backwardEulerStep(double current_time, double new_time) override | IBAMR::IBInterpolantMethod | virtual |
beginDataRedistribution(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::IBInterpolantMethod | virtual |
coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
computeCenterOfMass(IBTK::EigenAlignedVector< Eigen::Vector3d > ¢er_of_mass, std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > &X_data) | IBAMR::IBInterpolantMethod | protected |
computeLagrangianFluidSource(double data_time) | IBAMR::IBStrategy | virtual |
computeLagrangianForce(double data_time) override | IBAMR::IBInterpolantMethod | virtual |
copyEulerianDataFromIntegrator(const std::string &var_name, int q_data_idx, double data_time) | IBAMR::IBInterpolantMethod | protected |
copyEulerianDataToIntegrator(double data_time) | IBAMR::IBInterpolantMethod | |
copyEulerianDataToIntegrator(const std::string &name, int q_data_idx, double data_time) | IBAMR::IBInterpolantMethod | protected |
d_center_of_mass_current (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_center_of_mass_initial (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_center_of_mass_new (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_current_time (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_do_log (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_error_if_points_leave_domain (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_ghosts (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_gridding_alg (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_half_time (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_hierarchy (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_ib_solver | IBAMR::IBStrategy | protected |
d_interp_kernel_fcn (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_l_data_manager (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_l_initializer (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_new_time (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_num_rigid_parts (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_object_name (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_Q_current_data (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_q_depth (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_q_hier_integrator (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_q_interp_idx (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_Q_new_data (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_q_var | IBAMR::IBInterpolantMethod | protected |
d_quaternion_current (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_quaternion_new (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_registered_for_restart (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_silo_writer (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_spread_kernel_fcn (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_struct_lag_idx_range | IBAMR::IBInterpolantMethod | protected |
d_use_fixed_coupling_ops | IBAMR::IBStrategy | protected |
d_X_current_data (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
d_X_new_data (defined in IBAMR::IBInterpolantMethod) | IBAMR::IBInterpolantMethod | protected |
endDataRedistribution(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::IBInterpolantMethod | virtual |
forwardEulerStep(double current_time, double new_time) override | IBAMR::IBInterpolantMethod | virtual |
freeLInitStrategy() | IBAMR::IBInterpolantMethod | |
getCoarsenAlgorithm(const std::string &name) const | IBAMR::IBStrategy | protected |
getCoarsenSchedules(const std::string &name) const | IBAMR::IBStrategy | protected |
getEulerianQPatchDataIndex(const std::string &var_name) | IBAMR::IBInterpolantMethod | inline |
getGhostfillRefineAlgorithm(const std::string &name) const | IBAMR::IBStrategy | protected |
getGhostfillRefineSchedules(const std::string &name) const | IBAMR::IBStrategy | protected |
getHierarchyMathOps() const | IBAMR::IBStrategy | protected |
getINSHierarchyIntegrator() const | IBAMR::IBStrategy | protected |
getLagrangianStructureIsActivated(int structure_number=0, int level_number=std::numeric_limits< int >::max()) const | IBAMR::IBStrategy | virtual |
getLDataManager() const | IBAMR::IBInterpolantMethod | |
getLevelDt(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
getMaxPointDisplacement() const | IBAMR::IBStrategy | virtual |
getMinimumGhostCellWidth() const override | IBAMR::IBInterpolantMethod | virtual |
getNumberOfNodes(const unsigned int struct_no) const | IBAMR::IBInterpolantMethod | inline |
getPositionData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **X_data, double data_time) | IBAMR::IBInterpolantMethod | protected |
getPressureHierarchyDataOps() const | IBAMR::IBStrategy | protected |
getProlongRefineAlgorithm(const std::string &name) const | IBAMR::IBStrategy | protected |
getProlongRefineSchedules(const std::string &name) const | IBAMR::IBStrategy | protected |
getQData(const std::string &var_name, std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **Q_data, double data_time) | IBAMR::IBInterpolantMethod | protected |
getStructureHandle(const int lag_idx) const | IBAMR::IBInterpolantMethod | |
getStructuresLevelNumber() const | IBAMR::IBInterpolantMethod | |
getVelocityHierarchyDataOps() const | IBAMR::IBStrategy | protected |
hasFluidSources() const | IBAMR::IBStrategy | virtual |
IBInterpolantMethod(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, int no_structures=1, bool register_for_restart=true) | IBAMR::IBInterpolantMethod | |
IBStrategy()=default | IBAMR::IBStrategy | |
inactivateLagrangianStructure(int structure_number=0, int level_number=std::numeric_limits< int >::max()) | IBAMR::IBStrategy | virtual |
initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) override | IBAMR::IBInterpolantMethod | virtual |
initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg, int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, int integrator_step, double init_data_time, bool initial_time) override | IBAMR::IBInterpolantMethod | virtual |
interpolatePressure(int p_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &p_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &p_ghost_fill_scheds, double data_time) | IBAMR::IBStrategy | virtual |
interpolateQ(double data_time) | IBAMR::IBInterpolantMethod | |
interpolateQ() | IBAMR::IBInterpolantMethod | |
interpolateVelocity(int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, double data_time) override | IBAMR::IBInterpolantMethod | virtual |
midpointStep(double current_time, double new_time) override | IBAMR::IBInterpolantMethod | virtual |
postprocessData() | IBAMR::IBStrategy | virtual |
postprocessIntegrateData(double current_time, double new_time, int num_cycles) override | IBAMR::IBInterpolantMethod | virtual |
postprocessSolveFluidEquations(double current_time, double new_time, int cycle_num) | IBAMR::IBStrategy | virtual |
preprocessIntegrateData(double current_time, double new_time, int num_cycles) override | IBAMR::IBInterpolantMethod | virtual |
preprocessSolveFluidEquations(double current_time, double new_time, int cycle_num) | IBAMR::IBStrategy | virtual |
putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBAMR::IBInterpolantMethod | virtual |
registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr) | IBAMR::IBStrategy | protected |
registerEulerianCommunicationAlgorithms() override | IBAMR::IBInterpolantMethod | virtual |
registerEulerianVariables() override | IBAMR::IBInterpolantMethod | virtual |
registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr) | IBAMR::IBStrategy | protected |
registerIBHierarchyIntegrator(IBHierarchyIntegrator *ib_solver) | IBAMR::IBStrategy | virtual |
registerLInitStrategy(SAMRAI::tbox::Pointer< IBTK::LInitStrategy > l_initializer) | IBAMR::IBInterpolantMethod | |
registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer, int workload_data_idx) | IBAMR::IBStrategy | virtual |
registerLSiloDataWriter(SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter > silo_writer) | IBAMR::IBInterpolantMethod | |
registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr) | IBAMR::IBStrategy | protected |
registerVariable(int ¤t_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< IBTK::CartGridFunction > init_fcn=SAMRAI::tbox::Pointer< IBTK::CartGridFunction >(NULL)) | IBAMR::IBStrategy | protected |
registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(NULL)) | IBAMR::IBStrategy | protected |
registerVariableAndHierarchyIntegrator(const std::string &var_name, const int var_depth, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, SAMRAI::tbox::Pointer< IBTK::HierarchyIntegrator > hier_integrator) | IBAMR::IBInterpolantMethod | virtual |
resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBAMR::IBInterpolantMethod | virtual |
resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
Serializable() | SAMRAI::tbox::Serializable | |
setupTagBuffer(SAMRAI::tbox::Array< int > &tag_buffer, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) const override | IBAMR::IBInterpolantMethod | virtual |
setUseFixedLEOperators(bool use_fixed_coupling_ops=true) | IBAMR::IBStrategy | |
spreadFluidSource(int q_data_idx, IBTK::RobinPhysBdryPatchStrategy *q_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &q_prolongation_scheds, double data_time) | IBAMR::IBStrategy | virtual |
spreadForce(int f_data_idx, IBTK::RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds, double data_time) override | IBAMR::IBInterpolantMethod | virtual |
spreadQ(double data_time) | IBAMR::IBInterpolantMethod | |
StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | |
trapezoidalStep(double current_time, double new_time) override | IBAMR::IBInterpolantMethod | virtual |
updateFixedLEOperators() | IBAMR::IBStrategy | virtual |
updateMeshPosition(double current_time, double new_time, const IBTK::EigenAlignedVector< Eigen::Vector3d > &U, const IBTK::EigenAlignedVector< Eigen::Vector3d > &W) | IBAMR::IBInterpolantMethod | |
zeroOutEulerianData(const std::string &var_name, int q_data_idx) | IBAMR::IBInterpolantMethod | protected |
~IBInterpolantMethod() | IBAMR::IBInterpolantMethod | |
~Serializable() | SAMRAI::tbox::Serializable | virtual |
~StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |