Class IBStrategy provides a generic interface for specifying the implementation details of a particular version of the IB method. More...

#include </home/runner/work/IBAMR/IBAMR/include/ibamr/IBStrategy.h>

Inheritance diagram for IBAMR::IBStrategy:

[legend]

Public Member Functions
	IBStrategy ()=default
	Constructor.

virtual void	registerIBHierarchyIntegrator (IBHierarchyIntegrator *ib_solver)

virtual void	registerEulerianVariables ()

virtual void	registerEulerianCommunicationAlgorithms ()

virtual const SAMRAI::hier::IntVector< NDIM > &	getMinimumGhostCellWidth () const =0

virtual void	setupTagBuffer (SAMRAI::tbox::Array< int > &tag_buffer, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) const

virtual void	inactivateLagrangianStructure (int structure_number=0, int level_number=std::numeric_limits< int >::max())

virtual void	activateLagrangianStructure (int structure_number=0, int level_number=std::numeric_limits< int >::max())

virtual bool	getLagrangianStructureIsActivated (int structure_number=0, int level_number=std::numeric_limits< int >::max()) const

virtual double	getMaxPointDisplacement () const

virtual void	preprocessIntegrateData (double current_time, double new_time, int num_cycles)

virtual void	postprocessIntegrateData (double current_time, double new_time, int num_cycles)

void	setUseFixedLEOperators (bool use_fixed_coupling_ops=true)

virtual void	updateFixedLEOperators ()

virtual void	interpolateVelocity (int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, double data_time)=0

virtual void	forwardEulerStep (double current_time, double new_time)=0

virtual void	backwardEulerStep (double current_time, double new_time)

virtual void	midpointStep (double current_time, double new_time)=0

virtual void	trapezoidalStep (double current_time, double new_time)=0

virtual void	computeLagrangianForce (double data_time)=0

virtual void	spreadForce (int f_data_idx, IBTK::RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds, double data_time)=0

virtual bool	hasFluidSources () const

virtual void	computeLagrangianFluidSource (double data_time)

virtual void	spreadFluidSource (int q_data_idx, IBTK::RobinPhysBdryPatchStrategy *q_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &q_prolongation_scheds, double data_time)

virtual void	interpolatePressure (int p_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &p_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &p_ghost_fill_scheds, double data_time)

virtual void	preprocessSolveFluidEquations (double current_time, double new_time, int cycle_num)

virtual void	postprocessSolveFluidEquations (double current_time, double new_time, int cycle_num)

virtual void	postprocessData ()

virtual void	initializePatchHierarchy (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg, int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, int integrator_step, double init_data_time, bool initial_time)

virtual void	registerLoadBalancer (SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer, int workload_data_idx)

virtual void	addWorkloadEstimate (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx)

virtual void	beginDataRedistribution (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg)

virtual void	endDataRedistribution (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg)

void	initializeLevelData (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) override

void	resetHierarchyConfiguration (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override

void	applyGradientDetector (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override

void	putToDatabase (SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override

Public Member Functions inherited from SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >
virtual double	getLevelDt (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time)

virtual double	advanceLevel (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false)

virtual void	resetTimeDependentData (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined)

virtual void	resetDataToPreadvanceState (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level)

virtual void	applyRichardsonExtrapolation (const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too)

virtual void	coarsenDataForRichardsonExtrapolation (const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance)

Protected Member Functions
INSHierarchyIntegrator *	getINSHierarchyIntegrator () const

SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyDataOpsReal< NDIM, double > >	getVelocityHierarchyDataOps () const

SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyDataOpsReal< NDIM, double > >	getPressureHierarchyDataOps () const

SAMRAI::tbox::Pointer< IBTK::HierarchyMathOps >	getHierarchyMathOps () const

void	registerVariable (int &current_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< IBTK::CartGridFunction > init_fcn=SAMRAI::tbox::Pointer< IBTK::CartGridFunction >(NULL))

void	registerVariable (int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(NULL))

void	registerGhostfillRefineAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr)

void	registerProlongRefineAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr)

void	registerCoarsenAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr)

SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > >	getGhostfillRefineAlgorithm (const std::string &name) const

SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > >	getProlongRefineAlgorithm (const std::string &name) const

SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	getCoarsenAlgorithm (const std::string &name) const

const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	getGhostfillRefineSchedules (const std::string &name) const

const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	getProlongRefineSchedules (const std::string &name) const

const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &	getCoarsenSchedules (const std::string &name) const

Protected Attributes
IBHierarchyIntegrator *	d_ib_solver = nullptr

bool	d_use_fixed_coupling_ops = false

Detailed Description

Class IBStrategy provides a generic interface for specifying the implementation details of a particular version of the IB method.

Options Controlling Interpolation and Spreading

All classes inheriting from IBStrategy read the following values from the input database to determine which interpolation and spreading delta functions should be used:

interp_delta_fcn: name of the interpolation kernel, provided as a string. Defaults to "IB_4".
spread_delta_fcn: name of the spreading kernel, provided as a string. Defaults to "IB_4".
IB_delta_fcn: overriding alias for the two previous entries - has the same default.

Member Function Documentation

◆ activateLagrangianStructure()

void IBAMR::IBStrategy::activateLagrangianStructure	(	int	structure_number = `0`,
		int	level_number = `std::numeric_limits<int>::max()`
	)

virtual

Activate a previously inactivated structure or part to be used again in FSI calculations.

Parameters

[in]	structure_number	Number of the structure/part.
[in]	level_number	Level on which the structure lives. For some inheriting classes (e.g., IBAMR::IBMethod) the structure number alone is not enough to establish uniqueness. The default value is interpreted as the finest level in the patch hierarchy.

Note: This method should be implemented by inheriting classes for which the notion of activating and inactivating a structure 'owned' by this class makes sense (for example, IBAMR::IBStrategySet does not directly own any structures, but IBAMR::IBMethod and IBAMR::IBFEMethod both do). The default implementation unconditionally aborts the program.

Reimplemented in IBAMR::IBMethod.

◆ addWorkloadEstimate()

void IBAMR::IBStrategy::addWorkloadEstimate	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		const int	workload_data_idx
	)

virtual

Add the estimated computational work from the current object per cell into the specified workload_data_idx.

An empty default implementation is provided.

Reimplemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, and IBAMR::IBInterpolantMethod.

◆ applyGradientDetector()

void IBAMR::IBStrategy::applyGradientDetector	(	SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	error_data_time,
		int	tag_index,
		bool	initial_time,
		bool	uses_richardson_extrapolation_too
	)

overridevirtual

Set integer tags to "one" in cells where refinement of the given level should occur according to user-supplied feature detection criteria.

See also: SAMRAI::mesh::StandardTagAndInitStrategy::applyGradientDetector

An empty default implementation is provided.

Reimplemented from SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >.

Reimplemented in IBAMR::IIMethod, and IBAMR::IBStrategySet.

◆ backwardEulerStep()

void IBAMR::IBStrategy::backwardEulerStep	(	double	current_time,
		double	new_time
	)

virtual

Advance the positions of the Lagrangian structure using the (explicit) backward Euler method.

A default implementation is provided that emits an unrecoverable exception.

Reimplemented in IBAMR::IBMethod, IBAMR::IBInterpolantMethod, and IBAMR::CIBMethod.

◆ beginDataRedistribution()

void IBAMR::IBStrategy::beginDataRedistribution	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	gridding_alg
	)

virtual

Begin redistributing Lagrangian data prior to regridding the patch hierarchy.

An empty default implementation is provided.

Reimplemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, and IBAMR::IBInterpolantMethod.

◆ computeLagrangianFluidSource()

void IBAMR::IBStrategy::computeLagrangianFluidSource ( double data_time )

virtual

Compute the Lagrangian source/sink density at the specified time within the current time interval.

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBMethod, and IBAMR::IBLevelSetMethod.

◆ computeLagrangianForce()

virtual void IBAMR::IBStrategy::computeLagrangianForce ( double data_time )

pure virtual

Compute the Lagrangian force at the specified time within the current time interval.

Implemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, and IBAMR::GeneralizedIBMethod.

◆ endDataRedistribution()

void IBAMR::IBStrategy::endDataRedistribution	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	gridding_alg
	)

virtual

Complete redistributing Lagrangian data following regridding the patch hierarchy.

An empty default implementation is provided.

Reimplemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, and IBAMR::IBInterpolantMethod.

◆ forwardEulerStep()

virtual void IBAMR::IBStrategy::forwardEulerStep	(	double	current_time,
		double	new_time
	)

pure virtual

Advance the positions of the Lagrangian structure using the forward Euler method.

Implemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, IBAMR::ConstraintIBMethod, and IBAMR::CIBMethod.

◆ getCoarsenAlgorithm()

Pointer< CoarsenAlgorithm< NDIM > > IBAMR::IBStrategy::getCoarsenAlgorithm ( const std::string & name ) const

protected

Get coarsen algorithm.

◆ getCoarsenSchedules()

const std::vector< Pointer< CoarsenSchedule< NDIM > > > & IBAMR::IBStrategy::getCoarsenSchedules ( const std::string & name ) const

protected

Get coarsen schedules.

Note: These schedules are allocated only for level numbers >= 1.

◆ getGhostfillRefineAlgorithm()

Pointer< RefineAlgorithm< NDIM > > IBAMR::IBStrategy::getGhostfillRefineAlgorithm ( const std::string & name ) const

protected

Get ghost cell-filling refine algorithm.

◆ getGhostfillRefineSchedules()

const std::vector< Pointer< RefineSchedule< NDIM > > > & IBAMR::IBStrategy::getGhostfillRefineSchedules ( const std::string & name ) const

protected

Get ghost cell-filling refine schedules.

◆ getHierarchyMathOps()

Pointer< HierarchyMathOps > IBAMR::IBStrategy::getHierarchyMathOps ( ) const

protected

Return a pointer to a HierarchyMathOps object.

◆ getINSHierarchyIntegrator()

INSHierarchyIntegrator * IBAMR::IBStrategy::getINSHierarchyIntegrator ( ) const

protected

Return a pointer to the INSHierarchyIntegrator object being used with the IBHierarchyIntegrator class registered with this IBStrategy object.

◆ getLagrangianStructureIsActivated()

bool IBAMR::IBStrategy::getLagrangianStructureIsActivated	(	int	structure_number = `0`,
		int	level_number = `std::numeric_limits<int>::max()`
	)		const

virtual

Determine whether or not the given structure or part is currently activated.

Parameters

[in]	structure_number	Number of the structure/part.
[in]	level_number	Level on which the structure lives. For some inheriting classes (e.g., IBAMR::IBMethod) the structure number alone is not enough to establish uniqueness. The default value is interpreted as the finest level in the patch hierarchy.

Note: This method should be implemented by inheriting classes for which the notion of activating and inactivating a structure 'owned' by this class makes sense (for example, IBAMR::IBStrategySet does not directly own any structures, but IBAMR::IBMethod and IBAMR::IBFEMethod both do). The default implementation unconditionally aborts the program.

Reimplemented in IBAMR::IBMethod.

◆ getMaxPointDisplacement()

double IBAMR::IBStrategy::getMaxPointDisplacement ( ) const

virtual

Get the ratio of the maximum point displacement of all the structures owned by the current class to the cell width of the grid level on which the structure is assigned. This value is useful for determining if the Eulerian patch hierarchy needs to be regridded.

Note: The process of regridding is distinct, for some IBStrategy objects (like IBFEMethod), from forming (or reforming) the association between Lagrangian structures and patches. In particular, this function computes the distance between the current position of the structure and the structure at the point of the last regrid, which may not be the same point at which we last rebuilt the structure-to-patch mappings. The reassociation check should be implemented in postprocessIntegrateData().

Reimplemented in IBAMR::IBStrategySet.

◆ getMinimumGhostCellWidth()

virtual const SAMRAI::hier::IntVector<NDIM>& IBAMR::IBStrategy::getMinimumGhostCellWidth ( ) const

pure virtual

Return the number of ghost cells required by the Lagrangian-Eulerian interaction routines.

Implemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, and IBAMR::IBInterpolantMethod.

◆ getPressureHierarchyDataOps()

Pointer< HierarchyDataOpsReal< NDIM, double > > IBAMR::IBStrategy::getPressureHierarchyDataOps ( ) const

protected

Return a pointer to the HierarchyDataOpsReal object associated with pressure-like variables.

◆ getProlongRefineAlgorithm()

Pointer< RefineAlgorithm< NDIM > > IBAMR::IBStrategy::getProlongRefineAlgorithm ( const std::string & name ) const

protected

Get data-prolonging refine algorithm.

◆ getProlongRefineSchedules()

const std::vector< Pointer< RefineSchedule< NDIM > > > & IBAMR::IBStrategy::getProlongRefineSchedules ( const std::string & name ) const

protected

Get data-prolonging refine schedules.

Note: These schedules are allocated only for level numbers >= 1.

◆ getVelocityHierarchyDataOps()

Pointer< HierarchyDataOpsReal< NDIM, double > > IBAMR::IBStrategy::getVelocityHierarchyDataOps ( ) const

protected

Return a pointer to the HierarchyDataOpsReal object associated with velocity-like variables.

◆ hasFluidSources()

bool IBAMR::IBStrategy::hasFluidSources ( ) const

virtual

Indicate whether there are any internal fluid sources/sinks.

A default implementation is provided that returns false.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBMethod, and IBAMR::IBLevelSetMethod.

◆ inactivateLagrangianStructure()

void IBAMR::IBStrategy::inactivateLagrangianStructure	(	int	structure_number = `0`,
		int	level_number = `std::numeric_limits<int>::max()`
	)

virtual

Inactivate a structure or part. Such a structure will be ignored by FSI calculations: i.e., it will have its velocity set to zero and no forces will be spread from the structure to the Eulerian grid.

Parameters

[in]	structure_number	Number of the structure/part.
[in]	level_number	Level on which the structure lives. For some inheriting classes (e.g., IBAMR::IBMethod) the structure number alone is not enough to establish uniqueness. The default value is interpreted as the finest level in the patch hierarchy.

Note: This method should be implemented by inheriting classes for which the notion of activating and inactivating a structure 'owned' by this class makes sense (for example, IBAMR::IBStrategySet does not directly own any structures, but IBAMR::IBMethod and IBAMR::IBFEMethod both do). The default implementation unconditionally aborts the program.

Reimplemented in IBAMR::IBMethod.

◆ initializeLevelData()

void IBAMR::IBStrategy::initializeLevelData	(	SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time,
		SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >	old_level,
		bool	allocate_data
	)

overridevirtual

Initialize data on a new level after it is inserted into an AMR patch hierarchy by the gridding algorithm.

See also: SAMRAI::mesh::StandardTagAndInitStrategy::initializeLevelData

An empty default implementation is provided.

Implements SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >.

Reimplemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, and IBAMR::IBStrategySet.

◆ initializePatchHierarchy()

void IBAMR::IBStrategy::initializePatchHierarchy	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	gridding_alg,
		int	u_data_idx,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &	u_synch_scheds,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	u_ghost_fill_scheds,
		int	integrator_step,
		double	init_data_time,
		bool	initial_time
	)

virtual

Initialize Lagrangian data corresponding to the given AMR patch hierarchy at the start of a computation. If the computation is begun from a restart file, data may be read from the restart databases.

A patch data descriptor is provided for the Eulerian velocity in case initialization requires interpolating Eulerian data. Ghost cells for Eulerian data will be filled upon entry to this function.

An empty default implementation is provided.

Reimplemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, and IBAMR::CIBMethod.

◆ interpolatePressure()

void IBAMR::IBStrategy::interpolatePressure	(	int	p_data_idx,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &	p_synch_scheds,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	p_ghost_fill_scheds,
		double	data_time
	)

virtual

Compute the pressures at the positions of any distributed internal fluid sources or sinks.

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBMethod, and IBAMR::IBLevelSetMethod.

◆ interpolateVelocity()

virtual void IBAMR::IBStrategy::interpolateVelocity	(	int	u_data_idx,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &	u_synch_scheds,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	u_ghost_fill_scheds,
		double	data_time
	)

pure virtual

Interpolate the Eulerian velocity to the curvilinear mesh at the specified time within the current time interval.

Implemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, and IBAMR::CIBMethod.

◆ midpointStep()

virtual void IBAMR::IBStrategy::midpointStep	(	double	current_time,
		double	new_time
	)

pure virtual

Advance the positions of the Lagrangian structure using the (explicit) midpoint rule.

Implemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, IBAMR::ConstraintIBMethod, and IBAMR::CIBMethod.

◆ postprocessData()

void IBAMR::IBStrategy::postprocessData ( )

virtual

Execute user-defined post-processing operations.

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBMethod, and IBAMR::IBLevelSetMethod.

◆ postprocessIntegrateData()

void IBAMR::IBStrategy::postprocessIntegrateData	(	double	current_time,
		double	new_time,
		int	num_cycles
	)

virtual

Method to clean up data following call(s) to integrateHierarchy().

An empty default implementation is provided.

Reimplemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, IBAMR::ConstraintIBMethod, and IBAMR::CIBMethod.

◆ postprocessSolveFluidEquations()

void IBAMR::IBStrategy::postprocessSolveFluidEquations	(	double	current_time,
		double	new_time,
		int	cycle_num
	)

virtual

Execute user-defined routines just after solving the fluid equations.

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBLevelSetMethod, and IBAMR::ConstraintIBMethod.

◆ preprocessIntegrateData()

void IBAMR::IBStrategy::preprocessIntegrateData	(	double	current_time,
		double	new_time,
		int	num_cycles
	)

virtual

Method to prepare to advance data from current_time to new_time.

An empty default implementation is provided.

Reimplemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, IBAMR::ConstraintIBMethod, and IBAMR::CIBMethod.

◆ preprocessSolveFluidEquations()

void IBAMR::IBStrategy::preprocessSolveFluidEquations	(	double	current_time,
		double	new_time,
		int	cycle_num
	)

virtual

Execute user-defined routines just before solving the fluid equations.

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBLevelSetMethod, IBAMR::ConstraintIBMethod, and IBAMR::CIBMethod.

◆ putToDatabase()

void IBAMR::IBStrategy::putToDatabase ( SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db )

overridevirtual

Write out object state to the given database.

An empty default implementation is provided.

Implements SAMRAI::tbox::Serializable.

Reimplemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, and IBAMR::IBStrategySet.

◆ registerCoarsenAlgorithm()

void IBAMR::IBStrategy::registerCoarsenAlgorithm	(	const std::string &	name,
		SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	coarsen_alg,
		std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > >	coarsen_patch_strategy = `nullptr`
	)

protected

Register a coarsen algorithm.

◆ registerEulerianCommunicationAlgorithms()

void IBAMR::IBStrategy::registerEulerianCommunicationAlgorithms ( )

virtual

Register Eulerian refinement or coarsening algorithms with the parent IBHierarchyIntegrator using the two versions of the protected methods IBStrategy::registerGhostfillRefineAlgorithm(), IBStrategy::registerProlongRefineAlgorithm(), and IBStrategy::registerCoarsenAlgorithm().

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, and IBAMR::CIBMethod.

◆ registerEulerianVariables()

void IBAMR::IBStrategy::registerEulerianVariables ( )

virtual

Register Eulerian variables with the parent IBHierarchyIntegrator with the VariableDatabase, or via the various versions of the protected method IBStrategy::registerVariable().

An empty default implementation is provided.

Reimplemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, IBAMR::ConstraintIBMethod, and IBAMR::CIBMethod.

◆ registerGhostfillRefineAlgorithm()

void IBAMR::IBStrategy::registerGhostfillRefineAlgorithm	(	const std::string &	name,
		SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > >	ghostfill_alg,
		std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > >	ghostfill_patch_strategy = `nullptr`
	)

protected

Register a ghost cell-filling refine algorithm.

◆ registerIBHierarchyIntegrator()

void IBAMR::IBStrategy::registerIBHierarchyIntegrator ( IBHierarchyIntegrator * ib_solver )

virtual

Register the IBHierarchyIntegrator object that is using this strategy class.

Reimplemented in IBAMR::IBStrategySet, and IBAMR::IBLevelSetMethod.

◆ registerLoadBalancer()

void IBAMR::IBStrategy::registerLoadBalancer	(	SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > >	load_balancer,
		int	workload_data_idx
	)

virtual

Register a load balancer and work load patch data index with the IB strategy object.

An empty default implementation is provided.

Deprecated:: This method is no longer necessary with the current workload estimation scheme.

Reimplemented in IBAMR::IIMethod, IBAMR::IBStrategySet, and IBAMR::IBMethod.

◆ registerProlongRefineAlgorithm()

void IBAMR::IBStrategy::registerProlongRefineAlgorithm	(	const std::string &	name,
		SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > >	prolong_alg,
		std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > >	prolong_patch_strategy = `nullptr`
	)

protected

Register a data-prolonging refine algorithm.

◆ registerVariable() [1/2]

void IBAMR::IBStrategy::registerVariable	(	int &	current_idx,
		int &	new_idx,
		int &	scratch_idx,
		SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	variable,
		const SAMRAI::hier::IntVector< NDIM > &	scratch_ghosts = `SAMRAI::hier::IntVector<NDIM>(0)`,
		const std::string &	coarsen_name = `"NO_COARSEN"`,
		const std::string &	refine_name = `"NO_REFINE"`,
		SAMRAI::tbox::Pointer< IBTK::CartGridFunction >	init_fcn = `SAMRAI::tbox::Pointer<IBTK::CartGridFunction>(NULL)`
	)

protected

Register a state variable with the integrator. When a refine operator is specified, the data for the variable are automatically maintained as the patch hierarchy evolves.

All state variables are registered with three contexts: current, new, and scratch. The current context of a state variable is maintained from time step to time step and, if the necessary coarsen and refine operators are specified, as the patch hierarchy evolves.

◆ registerVariable() [2/2]

void IBAMR::IBStrategy::registerVariable	(	int &	idx,
		SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	variable,
		const SAMRAI::hier::IntVector< NDIM > &	ghosts = `SAMRAI::hier::IntVector<NDIM>(0)`,
		SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	ctx = `SAMRAI::tbox::Pointer<SAMRAI::hier::VariableContext>(NULL)`
	)

protected

Register a variable with the integrator that may not be maintained from time step to time step.

By default, variables are registered with the scratch context, which is deallocated after each time step.

◆ resetHierarchyConfiguration()

void IBAMR::IBStrategy::resetHierarchyConfiguration	(	SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > >	hierarchy,
		int	coarsest_level,
		int	finest_level
	)

overridevirtual

Reset cached hierarchy dependent data.

See also: SAMRAI::mesh::StandardTagAndInitStrategy::resetHierarchyConfiguration

An empty default implementation is provided.

Implements SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >.

Reimplemented in IBAMR::IIMethod, and IBAMR::IBStrategySet.

◆ setupTagBuffer()

void IBAMR::IBStrategy::setupTagBuffer	(	SAMRAI::tbox::Array< int > &	tag_buffer,
		SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	gridding_alg
	)		const

virtual

Setup the tag buffer.

A default implementation is provided that sets the tag buffer to be at least the minimum ghost cell width.

Reimplemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, and IBAMR::IBInterpolantMethod.

◆ setUseFixedLEOperators()

void IBAMR::IBStrategy::setUseFixedLEOperators ( bool use_fixed_coupling_ops = true )

Indicate whether "fixed" interpolation and spreading operators should be used during Lagrangian-Eulerian interaction.

◆ spreadFluidSource()

void IBAMR::IBStrategy::spreadFluidSource	(	int	q_data_idx,
		IBTK::RobinPhysBdryPatchStrategy *	q_phys_bdry_op,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	q_prolongation_scheds,
		double	data_time
	)

virtual

Spread the Lagrangian source/sink density to the Cartesian grid at the specified time within the current time interval.

An empty default implementation is provided.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBMethod, and IBAMR::IBLevelSetMethod.

◆ spreadForce()

virtual void IBAMR::IBStrategy::spreadForce	(	int	f_data_idx,
		IBTK::RobinPhysBdryPatchStrategy *	f_phys_bdry_op,
		const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	f_prolongation_scheds,
		double	data_time
	)

pure virtual

Spread the Lagrangian force to the Cartesian grid at the specified time within the current time interval.

Implemented in IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, and IBAMR::CIBMethod.

◆ trapezoidalStep()

virtual void IBAMR::IBStrategy::trapezoidalStep	(	double	current_time,
		double	new_time
	)

pure virtual

Advance the positions of the Lagrangian structure using the (explicit) trapezoidal rule.

Implemented in IBAMR::PenaltyIBMethod, IBAMR::IIMethod, IBAMR::IBStrategySet, IBAMR::IBMethod, IBAMR::IBLevelSetMethod, IBAMR::IBInterpolantMethod, IBAMR::GeneralizedIBMethod, and IBAMR::CIBMethod.

◆ updateFixedLEOperators()

void IBAMR::IBStrategy::updateFixedLEOperators ( )

virtual

Update the positions used for the "fixed" interpolation and spreading operators.

A default implementation is provided that emits an unrecoverable exception.

Reimplemented in IBAMR::IBStrategySet, IBAMR::IBMethod, and IBAMR::IBLevelSetMethod.

Member Data Documentation

◆ d_ib_solver

IBHierarchyIntegrator* IBAMR::IBStrategy::d_ib_solver = nullptr

protected

The IBHierarchyIntegrator object that is using this strategy class.

◆ d_use_fixed_coupling_ops

bool IBAMR::IBStrategy::d_use_fixed_coupling_ops = false

protected

Whether to use "fixed" Lagrangian-Eulerian coupling operators.

The documentation for this class was generated from the following files:

/home/runner/work/IBAMR/IBAMR/include/ibamr/IBStrategy.h
/home/runner/work/IBAMR/IBAMR/src/IB/IBStrategy.cpp

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Options Controlling Interpolation and Spreading

Member Function Documentation

◆ activateLagrangianStructure()

◆ addWorkloadEstimate()

◆ applyGradientDetector()

◆ backwardEulerStep()

◆ beginDataRedistribution()

◆ computeLagrangianFluidSource()

◆ computeLagrangianForce()

◆ endDataRedistribution()

◆ forwardEulerStep()

◆ getCoarsenAlgorithm()

◆ getCoarsenSchedules()

◆ getGhostfillRefineAlgorithm()

◆ getGhostfillRefineSchedules()

◆ getHierarchyMathOps()

◆ getINSHierarchyIntegrator()

◆ getLagrangianStructureIsActivated()

◆ getMaxPointDisplacement()

◆ getMinimumGhostCellWidth()

◆ getPressureHierarchyDataOps()

◆ getProlongRefineAlgorithm()

◆ getProlongRefineSchedules()

◆ getVelocityHierarchyDataOps()

◆ hasFluidSources()

◆ inactivateLagrangianStructure()

◆ initializeLevelData()

◆ initializePatchHierarchy()

◆ interpolatePressure()

◆ interpolateVelocity()

◆ midpointStep()

◆ postprocessData()

◆ postprocessIntegrateData()

◆ postprocessSolveFluidEquations()

◆ preprocessIntegrateData()

◆ preprocessSolveFluidEquations()

◆ putToDatabase()

◆ registerCoarsenAlgorithm()

◆ registerEulerianCommunicationAlgorithms()

◆ registerEulerianVariables()

◆ registerGhostfillRefineAlgorithm()

◆ registerIBHierarchyIntegrator()

◆ registerLoadBalancer()

◆ registerProlongRefineAlgorithm()

◆ registerVariable() [1/2]

◆ registerVariable() [2/2]

◆ resetHierarchyConfiguration()

◆ setupTagBuffer()

◆ setUseFixedLEOperators()

◆ spreadFluidSource()

◆ spreadForce()

◆ trapezoidalStep()

◆ updateFixedLEOperators()

Member Data Documentation

◆ d_ib_solver

◆ d_use_fixed_coupling_ops