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IBAMR
An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method
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This is the complete list of members for IBAMR::IBMethod, including all inherited members.
| AB2Step(double current_time, double new_time) | IBAMR::IBStrategy | virtual |
| activateLagrangianStructure(int structure_number=0, int level_number=std::numeric_limits< int >::max()) override | IBAMR::IBMethod | virtual |
| addWorkloadEstimate(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) override | IBAMR::IBMethod | virtual |
| advanceLevel(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| applyGradientDetector(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override | IBAMR::IBMethod | virtual |
| applyRichardsonExtrapolation(const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| backwardEulerStep(double current_time, double new_time) override | IBAMR::IBMethod | virtual |
| beginDataRedistribution(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::IBMethod | virtual |
| coarsenDataForRichardsonExtrapolation(const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| computeForce(Vec X, Vec F) (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| computeForce_SAMRAI(void *ctx, Vec X, Vec F) (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protectedstatic |
| computeLagrangianFluidSource(double data_time) override | IBAMR::IBMethod | virtual |
| computeLagrangianForce(double data_time) override | IBAMR::IBMethod | virtual |
| computeLinearizedLagrangianForce(Vec &X_vec, double data_time) override | IBAMR::IBMethod | virtual |
| computeLinearizedResidual(Vec &X_vec, Vec &R_vec) override | IBAMR::IBMethod | virtual |
| computeResidual(Vec &R_vec) override | IBAMR::IBMethod | virtual |
| constructInterpOp(Mat &J, void(*spread_fnc)(const double, double *), int stencil_width, const std::vector< int > &num_dofs_per_proc, int dof_index_idx, double data_time) override | IBAMR::IBMethod | virtual |
| constructLagrangianForceJacobian(Mat &A, MatType mat_type, double data_time) override | IBAMR::IBMethod | virtual |
| createSolverVecs(Vec *X_vec, Vec *F_vec) override | IBAMR::IBMethod | virtual |
| d_anchor_point_local_idxs (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_current_time (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_do_log (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_error_if_points_leave_domain (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_current_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_current_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_half_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_half_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_jac_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_jac_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_new_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_F_new_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_ghosts (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_gridding_alg (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_half_time (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_hierarchy (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_ib_force_fcn (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_ib_force_fcn_needs_init (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_ib_solver | IBAMR::IBStrategy | protected |
| d_ib_source_fcn (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_ib_source_fcn_needs_init (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_instrument_panel (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_interp_kernel_fcn (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_l_data_manager (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_l_initializer (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_load_balancer (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_n_src (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_new_time (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_normalize_source_strength (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_object_name (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_P_src (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_post_processor (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_Q_src (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_r_src (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_registered_for_restart (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_silo_writer (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_spread_kernel_fcn (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_total_flow_volume (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_U_current_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_U_half_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_U_jac_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_U_new_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_use_fixed_coupling_ops | IBAMR::IBStrategy | protected |
| d_workload_idx (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_current_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_current_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_half_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_half_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_jac_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_jac_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_LE_half_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_LE_half_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_LE_new_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_LE_new_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_new_data (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_new_needs_ghost_fill (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| d_X_src (defined in IBAMR::IBMethod) | IBAMR::IBMethod | protected |
| endDataRedistribution(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override | IBAMR::IBMethod | virtual |
| forwardEulerStep(double current_time, double new_time) override | IBAMR::IBMethod | virtual |
| freeLInitStrategy() | IBAMR::IBMethod | |
| getCoarsenAlgorithm(const std::string &name) const | IBAMR::IBStrategy | protected |
| getCoarsenSchedules(const std::string &name) const | IBAMR::IBStrategy | protected |
| getForceData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **F_data, bool **F_needs_ghost_fill, double data_time) | IBAMR::IBMethod | protected |
| getGhostfillRefineAlgorithm(const std::string &name) const | IBAMR::IBStrategy | protected |
| getGhostfillRefineSchedules(const std::string &name) const | IBAMR::IBStrategy | protected |
| getHierarchyMathOps() const | IBAMR::IBStrategy | protected |
| getIBInstrumentPanel() const | IBAMR::IBMethod | |
| getINSHierarchyIntegrator() const | IBAMR::IBStrategy | protected |
| getLagrangianStructureIsActivated(int structure_number=0, int level_number=std::numeric_limits< int >::max()) const override | IBAMR::IBMethod | virtual |
| getLDataManager() const | IBAMR::IBMethod | |
| getLECouplingPositionData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **X_LE_data, bool **X_LE_needs_ghost_fill, double data_time) | IBAMR::IBMethod | protected |
| getLevelDt(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| getLinearizedForceData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **F_data, bool **F_needs_ghost_fill) | IBAMR::IBMethod | protected |
| getLinearizedPositionData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **X_data, bool **X_needs_ghost_fill) | IBAMR::IBMethod | protected |
| getLinearizedVelocityData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **U_data) | IBAMR::IBMethod | protected |
| getMaxPointDisplacement() const | IBAMR::IBStrategy | virtual |
| getMinimumGhostCellWidth() const override | IBAMR::IBMethod | virtual |
| getPositionData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **X_data, bool **X_needs_ghost_fill, double data_time) | IBAMR::IBMethod | protected |
| getPressureHierarchyDataOps() const | IBAMR::IBStrategy | protected |
| getProlongRefineAlgorithm(const std::string &name) const | IBAMR::IBStrategy | protected |
| getProlongRefineSchedules(const std::string &name) const | IBAMR::IBStrategy | protected |
| getVelocityData(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > **U_data, double data_time) | IBAMR::IBMethod | protected |
| getVelocityHierarchyDataOps() const | IBAMR::IBStrategy | protected |
| hasFluidSources() const override | IBAMR::IBMethod | virtual |
| IBImplicitStrategy()=default | IBAMR::IBImplicitStrategy | |
| IBMethod(std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true) | IBAMR::IBMethod | |
| IBStrategy()=default | IBAMR::IBStrategy | |
| inactivateLagrangianStructure(int structure_number=0, int level_number=std::numeric_limits< int >::max()) override | IBAMR::IBMethod | virtual |
| initializeLevelData(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) override | IBAMR::IBMethod | virtual |
| initializePatchHierarchy(SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg, int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, int integrator_step, double init_data_time, bool initial_time) override | IBAMR::IBMethod | virtual |
| interpolateLinearizedVelocity(int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, double data_time) override | IBAMR::IBMethod | virtual |
| interpolatePressure(int p_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &p_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &p_ghost_fill_scheds, double data_time) override | IBAMR::IBMethod | virtual |
| interpolateVelocity(int u_data_idx, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &u_synch_scheds, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &u_ghost_fill_scheds, double data_time) override | IBAMR::IBMethod | virtual |
| midpointStep(double current_time, double new_time) override | IBAMR::IBMethod | virtual |
| postprocessData() override | IBAMR::IBMethod | virtual |
| postprocessIntegrateData(double current_time, double new_time, int num_cycles) override | IBAMR::IBMethod | virtual |
| postprocessSolveFluidEquations(double current_time, double new_time, int cycle_num) | IBAMR::IBStrategy | virtual |
| preprocessIntegrateData(double current_time, double new_time, int num_cycles) override | IBAMR::IBMethod | virtual |
| preprocessSolveFluidEquations(double current_time, double new_time, int cycle_num) | IBAMR::IBStrategy | virtual |
| putToDatabase(SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override | IBAMR::IBMethod | virtual |
| registerCoarsenAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr) | IBAMR::IBStrategy | protected |
| registerEulerianCommunicationAlgorithms() | IBAMR::IBStrategy | virtual |
| registerEulerianVariables() | IBAMR::IBStrategy | virtual |
| registerGhostfillRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr) | IBAMR::IBStrategy | protected |
| registerIBHierarchyIntegrator(IBHierarchyIntegrator *ib_solver) | IBAMR::IBStrategy | virtual |
| registerIBLagrangianForceFunction(SAMRAI::tbox::Pointer< IBLagrangianForceStrategy > ib_force_fcn) | IBAMR::IBMethod | |
| registerIBLagrangianSourceFunction(SAMRAI::tbox::Pointer< IBLagrangianSourceStrategy > ib_source_fcn) | IBAMR::IBMethod | |
| registerIBMethodPostProcessor(SAMRAI::tbox::Pointer< IBMethodPostProcessStrategy > post_processor) | IBAMR::IBMethod | |
| registerLInitStrategy(SAMRAI::tbox::Pointer< IBTK::LInitStrategy > l_initializer) | IBAMR::IBMethod | |
| registerLoadBalancer(SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer, int workload_data_idx) override | IBAMR::IBMethod | virtual |
| registerLSiloDataWriter(SAMRAI::tbox::Pointer< IBTK::LSiloDataWriter > silo_writer) | IBAMR::IBMethod | |
| registerProlongRefineAlgorithm(const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr) | IBAMR::IBStrategy | protected |
| registerVariable(int ¤t_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< IBTK::CartGridFunction > init_fcn=nullptr, const bool register_for_restart=true) | IBAMR::IBStrategy | protected |
| registerVariable(int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(nullptr), const bool register_for_restart=true) | IBAMR::IBStrategy | protected |
| reinitMidpointData(const std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > ¤t_data, const std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > &new_data, const std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > &half_data) | IBAMR::IBMethod | protected |
| resetAnchorPointValues(std::vector< SAMRAI::tbox::Pointer< IBTK::LData > > U_data, int coarsest_ln, int finest_ln) | IBAMR::IBMethod | protected |
| resetDataToPreadvanceState(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| resetHierarchyConfiguration(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override | IBAMR::IBMethod | virtual |
| resetTimeDependentData(const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined) | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
| Serializable() | SAMRAI::tbox::Serializable | |
| setLinearizedPosition(Vec &X_vec, double data_time) override | IBAMR::IBMethod | virtual |
| setUpdatedPosition(Vec &X_new_vec) override | IBAMR::IBMethod | virtual |
| setupSolverVecs(Vec *X_vec, Vec *F_vec) override | IBAMR::IBMethod | virtual |
| setupTagBuffer(SAMRAI::tbox::Array< int > &tag_buffer, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) const override | IBAMR::IBMethod | virtual |
| setUseFixedLEOperators(bool use_fixed_coupling_ops=true) | IBAMR::IBStrategy | |
| setUseMultistepTimeStepping(unsigned int n_previous_steps=1) | IBAMR::IBStrategy | virtual |
| spreadFluidSource(int q_data_idx, IBTK::RobinPhysBdryPatchStrategy *q_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &q_prolongation_scheds, double data_time) override | IBAMR::IBMethod | virtual |
| spreadForce(int f_data_idx, IBTK::RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds, double data_time) override | IBAMR::IBMethod | virtual |
| spreadLinearizedForce(int f_data_idx, IBTK::RobinPhysBdryPatchStrategy *f_phys_bdry_op, const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &f_prolongation_scheds, double data_time) override | IBAMR::IBMethod | virtual |
| StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | |
| trapezoidalStep(double current_time, double new_time) override | IBAMR::IBMethod | virtual |
| updateFixedLEOperators() override | IBAMR::IBMethod | virtual |
| ~IBImplicitStrategy()=default | IBAMR::IBImplicitStrategy | virtual |
| ~IBMethod() | IBAMR::IBMethod | |
| ~Serializable() | SAMRAI::tbox::Serializable | virtual |
| ~StandardTagAndInitStrategy() | SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > | virtual |
1.9.1