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IBAMR
IBAMR version 0.19.
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Partial solver for the Stokes-IB equations. More...

Public Member Functions | |
| IBImplicitStaggeredStokesSolver (const std::string &object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db) | |
| Class constructor. More... | |
| ~IBImplicitStaggeredStokesSolver () | |
| Class desctructor. More... | |
| void | setVelocityPoissonSpecifications (const SAMRAI::solv::PoissonSpecifications &U_problem_coefs) override |
| Set the PoissonSpecifications object used to specify the coefficients for the momentum equation in the incompressible Stokes operator. More... | |
| void | setPhysicalBcCoefs (const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &U_bc_coefs, SAMRAI::solv::RobinBcCoefStrategy< NDIM > *P_bc_coef) override |
| Set the SAMRAI::solv::RobinBcCoefStrategy objects used to specify physical boundary conditions. More... | |
| void | setPhysicalBoundaryHelper (SAMRAI::tbox::Pointer< StaggeredStokesPhysicalBoundaryHelper > bc_helper) override |
| Set the StokesSpecifications object and timestep size used to specify the coefficients for the time-dependent incompressible Stokes operator. More... | |
| void | setComponentsHaveNullSpace (const bool has_velocity_nullspace, const bool has_pressure_nullspace) override |
| Set if velocity and pressure have nullspace. More... | |
| bool | solveSystem (SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &, SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &) override |
| Solve the system of equations. More... | |
| SAMRAI::tbox::Pointer< StaggeredStokesOperator > | getStaggeredStokesOperator () |
| SAMRAI::tbox::Pointer< StaggeredStokesFACPreconditioner > | getStaggeredStokesFACPreconditioner () |
Protected Attributes | |
| SAMRAI::solv::PoissonSpecifications | d_U_problem_coefs |
| SAMRAI::solv::LocationIndexRobinBcCoefs< NDIM > | d_default_U_bc_coef |
| std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > | d_U_bc_coefs |
| SAMRAI::solv::LocationIndexRobinBcCoefs< NDIM > | d_default_P_bc_coef |
| SAMRAI::solv::RobinBcCoefStrategy< NDIM > * | d_P_bc_coef |
| SAMRAI::tbox::Pointer< StaggeredStokesPhysicalBoundaryHelper > | d_bc_helper |
| bool | d_has_velocity_nullspace = false |
| bool | d_has_pressure_nullspace = false |
Private Member Functions | |
| IBImplicitStaggeredStokesSolver ()=delete | |
| IBImplicitStaggeredStokesSolver (const IBImplicitStaggeredStokesSolver &from)=delete | |
| IBImplicitStaggeredStokesSolver & | operator= (const IBImplicitStaggeredStokesSolver &that)=delete |
Private Attributes | |
| SAMRAI::tbox::Pointer< StaggeredStokesOperator > | d_stokes_op |
| SAMRAI::tbox::Pointer< StaggeredStokesFACPreconditioner > | d_stokes_fac_pc |
General-purpose solver functionality. | |
| const std::string & | getName () const |
| Return the object name. More... | |
| virtual bool | getIsInitialized () const |
| Return whether the operator is initialized. More... | |
| virtual void | setHomogeneousBc (bool homogeneous_bc) |
| Set whether the solver should use homogeneous boundary conditions. More... | |
| virtual bool | getHomogeneousBc () const |
| Return whether the solver is using homogeneous boundary conditions. More... | |
| virtual void | setSolutionTime (double solution_time) |
| Set the time at which the solution is to be evaluated. More... | |
| virtual double | getSolutionTime () const |
| Get the time at which the solution is being evaluated. More... | |
| virtual void | setTimeInterval (double current_time, double new_time) |
| Set the current time interval. More... | |
| virtual std::pair< double, double > | getTimeInterval () const |
| Get the current time interval. More... | |
| virtual double | getDt () const |
| Get the current time step size. More... | |
| virtual void | setHierarchyMathOps (SAMRAI::tbox::Pointer< HierarchyMathOps > hier_math_ops) |
| Set the HierarchyMathOps object used by the solver. More... | |
| virtual SAMRAI::tbox::Pointer< HierarchyMathOps > | getHierarchyMathOps () const |
| Get the HierarchyMathOps object used by the solver. More... | |
| virtual void | initializeSolverState (const SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &x, const SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &b) |
| Compute hierarchy dependent data required for solving \(F[x]=b\). More... | |
| virtual void | deallocateSolverState () |
| Remove all hierarchy dependent data allocated by initializeSolverState(). More... | |
Functions to access solver parameters. | |
| virtual void | setMaxIterations (int max_iterations) |
| Set the maximum number of nonlinear iterations to use per solve. More... | |
| virtual int | getMaxIterations () const |
| Get the maximum number of nonlinear iterations to use per solve. More... | |
| virtual void | setAbsoluteTolerance (double abs_residual_tol) |
| Set the absolute residual tolerance for convergence. More... | |
| virtual double | getAbsoluteTolerance () const |
| Get the absolute residual tolerance for convergence. More... | |
| virtual void | setRelativeTolerance (double rel_residual_tol) |
| Set the relative residual tolerance for convergence. More... | |
| virtual double | getRelativeTolerance () const |
| Get the relative residual tolerance for convergence. More... | |
Logging functions. | |
| virtual void | setLoggingEnabled (bool enable_logging=true) |
| Enable or disable logging. More... | |
| virtual bool | getLoggingEnabled () const |
| Determine whether logging is enabled or disabled. More... | |
| virtual void | printClassData (std::ostream &stream) |
| Print class data to stream. More... | |
| std::string | d_object_name = "unitialized" |
| bool | d_is_initialized = false |
| bool | d_homogeneous_bc = false |
| double | d_solution_time = std::numeric_limits<double>::quiet_NaN() |
| double | d_current_time = std::numeric_limits<double>::quiet_NaN() |
| double | d_new_time = std::numeric_limits<double>::quiet_NaN() |
| double | d_rel_residual_tol = 0.0 |
| double | d_abs_residual_tol = 0.0 |
| int | d_max_iterations = 100 |
| int | d_current_iterations = 0 |
| double | d_current_residual_norm = std::numeric_limits<double>::quiet_NaN() |
| SAMRAI::tbox::Pointer< HierarchyMathOps > | d_hier_math_ops |
| bool | d_hier_math_ops_external = false |
| bool | d_enable_logging = false |
| void | init (const std::string &object_name, bool homogeneous_bc) |
| virtual void | initSpecialized (const std::string &object_name, bool homogeneous_bc) |
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inline |
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inline |
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privatedelete |
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privatedelete |
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inlineoverridevirtual |
Reimplemented from IBAMR::StaggeredStokesSolver.
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| U_bc_coefs | IBTK::Vector of pointers to objects that can set the Robin boundary condition coefficients for the velocity |
| P_bc_coef | Pointer to object that can set the Robin boundary condition coefficients for the pressure |
Reimplemented from IBAMR::StaggeredStokesSolver.
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Reimplemented from IBAMR::StaggeredStokesSolver.
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Reimplemented from IBAMR::StaggeredStokesSolver.
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Before calling solveSystem(), the form of the solution x and right-hand-side b vectors must be set properly by the user on all patch interiors on the specified range of levels in the patch hierarchy. The user is responsible for all data management for the quantities associated with the solution and right-hand-side vectors. In particular, patch data in these vectors must be allocated prior to calling this method.
| x | solution vector |
| b | right-hand-side vector |
Conditions on Parameters:
true if the solver converged to the specified tolerances, false otherwise Implements IBTK::GeneralSolver.
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inherited |
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Reimplemented in IBTK::FACPreconditioner, IBTK::NewtonKrylovSolver, and IBTK::KrylovLinearSolver.
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Reimplemented in IBAMR::CIBStaggeredStokesSolver, IBTK::FACPreconditioner, IBTK::NewtonKrylovSolver, and IBTK::KrylovLinearSolver.
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Reimplemented in IBAMR::CIBStaggeredStokesSolver, IBTK::FACPreconditioner, IBTK::NewtonKrylovSolver, and IBTK::KrylovLinearSolver.
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Reimplemented in IBTK::NewtonKrylovSolver, and IBTK::KrylovLinearSolver.
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In a typical implementation, the solveSystem() method will compute some required hierarchy dependent data before the solve, and then remove that data after the solve. For multiple solves that use the same hierarchy configuration, it is more efficient to:
Note that it is generally necessary to reinitialize the solver state when the hierarchy configuration changes.
| x | solution vector |
| b | right-hand-side vector |
Conditions on Parameters:
Reimplemented in IBTK::PETScKrylovLinearSolver, IBTK::PETScNewtonKrylovSolver, IBTK::CCPoissonHypreLevelSolver, IBTK::SCPoissonHypreLevelSolver, IBTK::BGaussSeidelPreconditioner, IBTK::PETScLevelSolver, IBTK::FACPreconditioner, IBTK::BJacobiPreconditioner, IBAMR::StaggeredStokesBlockPreconditioner, IBTK::PETScPCLSWrapper, IBAMR::StaggeredStokesBlockFactorizationPreconditioner, IBAMR::StaggeredStokesProjectionPreconditioner, IBAMR::VCStaggeredStokesProjectionPreconditioner, and IBAMR::CIBStaggeredStokesSolver.
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Reimplemented in IBTK::PETScKrylovLinearSolver, IBTK::PETScNewtonKrylovSolver, IBTK::CCPoissonHypreLevelSolver, IBTK::SCPoissonHypreLevelSolver, IBTK::BGaussSeidelPreconditioner, IBTK::PETScLevelSolver, IBTK::FACPreconditioner, IBTK::BJacobiPreconditioner, IBAMR::StaggeredStokesBlockPreconditioner, IBTK::PETScPCLSWrapper, IBAMR::StaggeredStokesBlockFactorizationPreconditioner, IBAMR::StaggeredStokesProjectionPreconditioner, IBAMR::VCStaggeredStokesProjectionPreconditioner, and IBAMR::CIBStaggeredStokesSolver.
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Reimplemented in IBTK::PETScPCLSWrapper.
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Reimplemented in IBTK::PETScPCLSWrapper.
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Reimplemented in IBTK::PETScPCLSWrapper.
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Reimplemented in IBTK::PETScPCLSWrapper.
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Reimplemented in IBTK::PETScPCLSWrapper.
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Reimplemented in IBTK::BGaussSeidelPreconditioner, IBTK::PETScPCLSWrapper, and IBTK::BJacobiPreconditioner.
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virtualinherited |
Reimplemented in IBTK::BGaussSeidelPreconditioner, IBTK::PETScPCLSWrapper, and IBTK::BJacobiPreconditioner.
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virtualinherited |
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virtualinherited |
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Reimplemented in IBTK::LinearSolver.
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Reimplemented in IBTK::PoissonSolver.
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1.8.17