IBTK::HierarchyMathOps Class Reference

Class HierarchyMathOps provides functionality to perform "composite-grid" mathematical operations on a range of levels in a SAMRAI::hier::PatchHierarchy object. More...

#include <ibtk/HierarchyMathOps.h>

Inheritance diagram for IBTK::HierarchyMathOps:

Public Member Functions
	HierarchyMathOps (std::string name, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number, std::string coarsen_op_name="CONSERVATIVE_COARSEN")
	Constructor. More...
virtual	~HierarchyMathOps ()=default
	Destructor. More...
Methods to set the hierarchy and range of levels.
void	setPatchHierarchy (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy)
	Reset the patch hierarchy over which operations occur. More...
void	resetLevels (int coarsest_ln, int finest_ln)
	Reset range of patch levels over which operations occur. More...

Methods to get cell weight data.
std::string	d_object_name
SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	d_hierarchy
SAMRAI::tbox::Pointer< SAMRAI::geom::CartesianGridGeometry< NDIM > >	d_grid_geom
int	d_coarsest_ln
int	d_finest_ln
SAMRAIDataCache	d_cached_eulerian_data
SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	d_fc_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	d_nc_s_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	d_nc_v_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	d_sc_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	d_ec_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::OuteredgeVariable< NDIM, double > >	d_oe_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::OuterfaceVariable< NDIM, double > >	d_of_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::OuternodeVariable< NDIM, double > >	d_on_s_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::OuternodeVariable< NDIM, double > >	d_on_v_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::OutersideVariable< NDIM, double > >	d_os_var
int	d_ec_idx = IBTK::invalid_index
int	d_fc_idx = IBTK::invalid_index
int	d_nc_s_idx = IBTK::invalid_index
int	d_nc_v_idx = IBTK::invalid_index
int	d_oe_idx = IBTK::invalid_index
int	d_sc_idx = IBTK::invalid_index
int	d_of_idx = IBTK::invalid_index
int	d_on_s_idx = IBTK::invalid_index
int	d_on_v_idx = IBTK::invalid_index
int	d_os_idx = IBTK::invalid_index
std::string	d_coarsen_op_name
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenOperator< NDIM > >	d_of_coarsen_op
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenOperator< NDIM > >	d_on_s_coarsen_op
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenOperator< NDIM > >	d_on_v_coarsen_op
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenOperator< NDIM > >	d_os_coarsen_op
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenOperator< NDIM > >	d_oe_coarsen_op
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	d_of_coarsen_alg
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	d_on_s_coarsen_alg
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	d_on_v_coarsen_alg
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	d_os_coarsen_alg
SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	d_oe_coarsen_alg
std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >	d_of_coarsen_scheds
std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >	d_on_s_coarsen_scheds
std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >	d_on_v_coarsen_scheds
std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >	d_os_coarsen_scheds
std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > >	d_oe_coarsen_scheds
SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyCellDataOpsReal< NDIM, double > >	d_hier_cc_data_ops
SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyFaceDataOpsReal< NDIM, double > >	d_hier_fc_data_ops
SAMRAI::tbox::Pointer< SAMRAI::math::HierarchySideDataOpsReal< NDIM, double > >	d_hier_sc_data_ops
PatchMathOps	d_patch_math_ops
SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	d_context
SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	d_wgt_cc_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	d_wgt_fc_var
SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	d_wgt_sc_var
int	d_wgt_cc_idx = IBTK::invalid_index
int	d_wgt_fc_idx = IBTK::invalid_index
int	d_wgt_sc_idx = IBTK::invalid_index
bool	d_using_wgt_cc = false
bool	d_using_wgt_fc = false
bool	d_using_wgt_sc = false
double	d_volume = 0.0
SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	getCellWeightVariable () const
	Access the SAMRAI::pdat::CellVariable that is used to store cell weights. These weights are used in computing discrete vector norms. More...
int	getCellWeightPatchDescriptorIndex ()
	Access the patch descriptor index that corresponds to the SAMRAI::pdat::CellVariable that is used to store cell weights. These weights are used in computing discrete vector norms. More...
SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	getFaceWeightVariable () const
	Access the SAMRAI::pdat::FaceVariable that is used to store face weights. These weights are used in computing discrete vector norms. More...
int	getFaceWeightPatchDescriptorIndex ()
	Access the patch descriptor index that corresponds to the SAMRAI::pdat::FaceVariable that is used to store face weights. These weights are used in computing discrete vector norms. More...
SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	getSideWeightVariable () const
	Access the SAMRAI::pdat::SideVariable that is used to store side weights. These weights are used in computing discrete vector norms. More...
int	getSideWeightPatchDescriptorIndex ()
	Access the patch descriptor index that corresponds to the SAMRAI::pdat::SideVariable that is used to store side weights. These weights are used in computing discrete vector norms. More...
double	getVolumeOfPhysicalDomain () const
	Returns the volume of the physical domain. More...
SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	getPatchHierarchy () const
	Get the patch hierarchy object associated with the class. More...
void	setCoarsenOperatorName (const std::string &coarsen_op_name)
	Set the name of the coarsen operator used for synchronizing the coarse-fine boundary. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a cell-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a face-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a face-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a side-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered curl of a side-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Compute the node-centered curl of a side-centered vector field using centered differences. More...
void	curl (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the edge-centered curl of a side-centered vector field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a node-centered scalar field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a node-centered scalar field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a edge-centered vector field using centered differences. More...
void	rot (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs=std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >())
	Compute the side-centered rot of a side-centered vector field using centered differences. More...
void	div (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src2_depth=0)
	Compute the cell-centered divergence of a cell-centered vector field using centered differences. More...
void	div (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, bool src1_cf_bdry_synch, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src2_depth=0)
	Compute the cell-centered divergence of a face-centered normal vector field using centered differences. More...
void	div (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, bool src1_cf_bdry_synch, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src2_depth=0)
	Compute the cell-centered divergence of a side-centered normal vector field using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	grad (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int src1_depth=0)
	Compute the gradient of a scalar quantity using centered differences. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from a face-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from a side-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a face-centered normal vector/tensor field from a cell-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a side-centered normal vector/tensor field from a cell-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from a node-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a cell-centered vector/tensor field from an edge-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a node-centered vector/tensor field from a face-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time, bool src_cf_bdry_synch)
	Interpolate to a node-centered vector/tensor field from a side-centered normal vector/tensor field. More...
void	interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. More...
void	harmonic_interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, bool dst_cf_bdry_synch, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a side-centered normal vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	harmonic_interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	harmonic_interp (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. Interpolate both in the cell and in the ghost region. More...
void	interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. More...
void	harmonic_interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a node-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	harmonic_interp_ghosted (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Harmonically interpolate to a edge-centered vector/tensor field from a cell-centered vector/tensor field. This should be used when the gradients in the src quantity are large. More...
void	laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, const SAMRAI::solv::PoissonSpecifications &poisson_spec, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute the Laplacian of a scalar quantity using centered differences. More...
void	laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, const SAMRAI::solv::PoissonSpecifications &poisson_spec, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr)
	Compute the Laplacian of a scalar quantity using centered differences. More...
void	vc_laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, double alpha, double beta, int coef1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > coef1_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, IBTK::VCInterpType coef1_interp_type=VC_HARMONIC_INTERP, int coef2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > coef2_var=nullptr, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr)
	Compute dst = alpha div coef1 ((grad src1) + (grad src1)^T) + beta coef2 src1 + gamma src2, the variable coefficient generalized Laplacian of src1. More...
void	vc_laplace (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, double alpha, double beta, int coef1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > coef1_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src1_ghost_fill, double src1_ghost_fill_time, IBTK::VCInterpType coef1_interp_type=VC_HARMONIC_INTERP, int coef2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > coef2_var=nullptr, double gamma=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr)
	Compute dst = alpha div coef1 ((grad src1) + (grad src1)^T) + beta coef2 src1 + gamma src2, the variable coefficient generalized Laplacian of src1. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, double alpha, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, double beta=0.0, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseMultiply (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > dst_var, int alpha_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > alpha_var, int src1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src1_var, int beta_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > beta_var=nullptr, int src2_idx=invalid_index, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src2_var=nullptr, int dst_depth=0, int src1_depth=0, int src2_depth=0, int alpha_depth=0, int beta_depth=0)
	Compute dst = alpha src1 + beta src2, pointwise. More...
void	pointwiseL1Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var)
	Compute dst = |src|_1, pointwise. More...
void	pointwiseL2Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var)
	Compute dst = |src|_2, pointwise. More...
void	pointwiseMaxNorm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > src_var)
	Compute dst = |src|_oo, pointwise. More...
void	pointwiseL1Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var)
	Compute dst = |src|_1, pointwise. More...
void	pointwiseL2Norm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var)
	Compute dst = |src|_2, pointwise. More...
void	pointwiseMaxNorm (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > src_var)
	Compute dst = |src|_oo, pointwise. More...
void	strain_rate (int dst1_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst1_var, int dst2_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst2_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered strain rate of a side-centered vector field using centered differences. More...
void	strain_rate (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > dst_var, int src_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > src_var, SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation > src_ghost_fill, double src_ghost_fill_time)
	Compute the cell-centered strain rate of a side-centered vector field using centered differences. More...
void	enforceHangingNodeConstraints (int dst_idx, SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > > dst_var)
	Enforce hanging node constraints in the sense of making the resulting bilinear or trilinear interpolation of nodal data continuous across the coarse-fine interface. More...
	HierarchyMathOps ()=delete
	Default constructor. More...
	HierarchyMathOps (const HierarchyMathOps &from)=delete
	Copy constructor. More...
HierarchyMathOps &	operator= (const HierarchyMathOps &that)=delete
	Assignment operator. More...
void	resetCoarsenOperators ()
	Reset the coarsen operators. More...
void	resetRefineOperators ()
	Reset the refine operators. More...
void	xeqScheduleOuterfaceRestriction (int dst_idx, int src_idx, int dst_ln)
	Execute schedule for restricting Outerface data to the specified level from the next finer level. More...
void	xeqScheduleOuternodeRestriction (int dst_idx, int src_idx, int dst_ln)
	Execute schedule for restricting Outernode data to the specified level from the next finer level. More...
void	xeqScheduleOutersideRestriction (int dst_idx, int src_idx, int dst_ln)
	Execute schedule for restricting Outerside data to the specified level from the next finer level. More...
void	xeqScheduleOuteredgeRestriction (int dst_idx, int src_idx, int dst_ln)
	Execute schedule for restricting Outeredge data to the specified level from the next finer level. More...
void	resetCellWeights (int coarsest_ln, int finest_ln)
	Reset cell-centered weights, allocating patch data if needed. More...
void	resetFaceWeights (int coarsest_ln, int finest_ln)
	Reset face-centered weights, allocating patch data if needed. More...
void	resetSideWeights (int coarsest_ln, int finest_ln)
	Reset side-centered weights, allocating patch data if needed. More...

Detailed Description

For nodal destination data, if the provided variable has fineBoundaryRepresentsVariable() == false and synch_dst_cf_interface == true then each routine will call HierarchyMathOps::enforceHangingNodeConstraints() to achieve a conforming bi/trilinear discretization.

Note

All specified variable descriptor indices must refer to SAMRAI::hier::Variable / SAMRAI::hier::VariableContext pairs that have been registered with the SAMRAI::hier::VariableDatabase.

Constructor & Destructor Documentation

HierarchyMathOps() [1/3]

IBTK::HierarchyMathOps::HierarchyMathOps	(	std::string	name,
		SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		int	coarsest_ln = invalid_level_number,
		int	finest_ln = invalid_level_number,
		std::string	coarsen_op_name = "CONSERVATIVE_COARSEN"
	)

Does nothing interesting.

~HierarchyMathOps()

virtual IBTK::HierarchyMathOps::~HierarchyMathOps ( )

virtualdefault

HierarchyMathOps() [2/3]

IBTK::HierarchyMathOps::HierarchyMathOps ( )

privatedelete

Note

This constructor is not implemented and should not be used.

HierarchyMathOps() [3/3]

IBTK::HierarchyMathOps::HierarchyMathOps ( const HierarchyMathOps &  from )

privatedelete

Note

This constructor is not implemented and should not be used.

Parameters

from	The value to copy to this object.

Member Function Documentation

setPatchHierarchy()

void IBTK::HierarchyMathOps::setPatchHierarchy

(

SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >

hierarchy

)

resetLevels()

void IBTK::HierarchyMathOps::resetLevels	(	int	coarsest_ln,
		int	finest_ln
	)

The specified levels must exist in the hierarchy or an assertion will result.

getCellWeightVariable()

SAMRAI::tbox::Pointer<SAMRAI::pdat::CellVariable<NDIM, double> > IBTK::HierarchyMathOps::getCellWeightVariable

(

)

const

If a cell is not refined in the hierarchy, its weight is set to its volume. If a cell is refined, its weight is set to zero.

getCellWeightPatchDescriptorIndex()

int IBTK::HierarchyMathOps::getCellWeightPatchDescriptorIndex

(

)

If a cell is not refined in the hierarchy, its weight is set to its volume. If a cell is refined, its weight is set to zero.

getFaceWeightVariable()

SAMRAI::tbox::Pointer<SAMRAI::pdat::FaceVariable<NDIM, double> > IBTK::HierarchyMathOps::getFaceWeightVariable

(

)

const

If a face is not refined in the hierarchy, its weight is set to its volume. If a face is refined, its weight is set to zero.

getFaceWeightPatchDescriptorIndex()

int IBTK::HierarchyMathOps::getFaceWeightPatchDescriptorIndex

(

)

If a face is not refined in the hierarchy, its weight is set to its volume. If a face is refined, its weight is set to zero.

getSideWeightVariable()

SAMRAI::tbox::Pointer<SAMRAI::pdat::SideVariable<NDIM, double> > IBTK::HierarchyMathOps::getSideWeightVariable

(

)

const

If a side is not refined in the hierarchy, its weight is set to its volume. If a side is refined, its weight is set to zero.

getSideWeightPatchDescriptorIndex()

int IBTK::HierarchyMathOps::getSideWeightPatchDescriptorIndex

(

)

If a side is not refined in the hierarchy, its weight is set to its volume. If a side is refined, its weight is set to zero.

getVolumeOfPhysicalDomain()

double IBTK::HierarchyMathOps::getVolumeOfPhysicalDomain

(

)

const

getPatchHierarchy()

SAMRAI::tbox::Pointer<SAMRAI::hier::PatchHierarchy<NDIM> > IBTK::HierarchyMathOps::getPatchHierarchy

(

)

const

setCoarsenOperatorName()

void IBTK::HierarchyMathOps::setCoarsenOperatorName

(

const std::string &

coarsen_op_name

)

curl() [1/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [2/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [3/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [4/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [5/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [6/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

curl() [7/7]

void IBTK::HierarchyMathOps::curl	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = curl src.

Compute the curl of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [1/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >()
	)

Sets dst = rot src.

Compute the rot of a 2d scalar field defined on nodes using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [2/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >()
	)

Sets dst = rot src.

Compute the rot of a 2d scalar field defined on nodes using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [3/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >()
	)

Sets dst = rot src.

Compute the rot of a 3d vector field defined on edges using centered differences.

See also

setPatchHierarchy

resetLevels

rot() [4/4]

void IBTK::HierarchyMathOps::rot	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	bc_coefs = std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >()
	)

Sets dst = rot src.

Compute the rot of a 3d vector field defined on sides using centered differences.

See also

setPatchHierarchy

resetLevels

div() [1/3]

void IBTK::HierarchyMathOps::div	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src2_depth = 0
	)

Sets dst = alpha div src1 + beta src2.

Compute the divergence of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

div() [2/3]

void IBTK::HierarchyMathOps::div	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		bool	src1_cf_bdry_synch,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src2_depth = 0
	)

Sets dst = alpha div src1 + beta src2.

Compute the divergence of a vector field using centered differences. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the differencing.

See also

setPatchHierarchy

resetLevels

div() [3/3]

void IBTK::HierarchyMathOps::div	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		bool	src1_cf_bdry_synch,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src2_depth = 0
	)

Sets dst = alpha div src1 + beta src2.

Compute the divergence of a vector field using centered differences. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the differencing.

See also

setPatchHierarchy

resetLevels

grad() [1/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences.

See also

setPatchHierarchy

resetLevels

grad() [2/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

See also

setPatchHierarchy

resetLevels

grad() [3/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

See also

setPatchHierarchy

resetLevels

grad() [4/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences.

See also

setPatchHierarchy

resetLevels

grad() [5/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences.

See also

setPatchHierarchy

resetLevels

grad() [6/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

Note

Homogeneous Neumann boundary conditions are explicitly enforced in the case of non-grid aligned anisotropy.

See also

setPatchHierarchy

resetLevels

grad() [7/7]

void IBTK::HierarchyMathOps::grad	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	src1_depth = 0
	)

Sets dst = alpha grad src1 + beta src2.

Compute the gradient of a scalar quantity using centered differences. When specified, coarse values on each coarse-fine interface are synchronized after performing the differencing.

Note

Homogeneous Neumann boundary conditions are explicitly enforced in the case of non-grid aligned anisotropy.

See also

setPatchHierarchy

resetLevels

interp() [1/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [2/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [3/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When the interpolation occurs over over multiple levels of the hierarchy, second order interpolation is used at the coarse-fine interface to correct fine values along the interface. When specified, coarse values on each coarse-fine interface are synchronized after performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [4/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When the interpolation occurs over multiple levels of the hierarchy, second order interpolation is used at the coarse-fine interface to correct fine values along the interface. When specified, coarse values on each coarse-fine interface are synchronized after performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [5/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

See also

setPatchHierarchy

resetLevels

interp() [6/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

See also

setPatchHierarchy

resetLevels

interp() [7/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

See also

setPatchHierarchy

resetLevels

interp() [8/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [9/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time,
		bool	src_cf_bdry_synch
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, coarse values on each coarse-fine interface are synchronized prior to performing the interpolation.

See also

setPatchHierarchy

resetLevels

interp() [10/10]

void IBTK::HierarchyMathOps::interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

See also

setPatchHierarchy

resetLevels

harmonic_interp() [1/3]

void IBTK::HierarchyMathOps::harmonic_interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		bool	dst_cf_bdry_synch,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) harmonic averaging. When the interpolation occurs over multiple levels of the hierarchy, second order interpolation is used at the coarse-fine interface to correct fine values along the interface. When specified, coarse values on each coarse-fine interface are synchronized after performing the interpolation.

See also

setPatchHierarchy

resetLevels

harmonic_interp() [2/3]

void IBTK::HierarchyMathOps::harmonic_interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the node centered variable are computed as averages of the cell centered variable

See also

setPatchHierarchy

resetLevels

harmonic_interp() [3/3]

void IBTK::HierarchyMathOps::harmonic_interp	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

See also

setPatchHierarchy

resetLevels

interp_ghosted() [1/2]

void IBTK::HierarchyMathOps::interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging.

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

interp_ghosted() [2/2]

void IBTK::HierarchyMathOps::interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

harmonic_interp_ghosted() [1/2]

void IBTK::HierarchyMathOps::harmonic_interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the node centered variable are computed as averages of the cell centered variable

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

harmonic_interp_ghosted() [2/2]

void IBTK::HierarchyMathOps::harmonic_interp_ghosted	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Interpolate a vector or tensor field from one variable type to another using (second-order accurate) averaging. When specified, the ghost cells of the edge centered variable are computed as averages of the cell centered variable

Warning

This function exists for backwards compatibility purposes. New code should handle ghost regions in the conventional way (i.e., that ghost data is read-only).

See also

setPatchHierarchy

resetLevels

laplace() [1/2]

void IBTK::HierarchyMathOps::laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		const SAMRAI::solv::PoissonSpecifications &	poisson_spec,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

Sets dst = C src1 + div D grad src1 + gamma src2.

Compute the Laplacian of a scalar quantity using centered differences, where C and D are specified by the SAMRAI::solv::PoissonSpecifications object poisson_spec. When the operation is being performed on multiple levels of the hierarchy, the appropriately synchronized gradient and divergence operators are employed to obtain a consistent discretization of the Laplace operator.

See also

setPatchHierarchy

resetLevels

laplace() [2/2]

void IBTK::HierarchyMathOps::laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		const SAMRAI::solv::PoissonSpecifications &	poisson_spec,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr
	)

Sets dst = C src1 + div D grad src1 + gamma src2.

Compute the Laplacian of a scalar quantity using centered differences, where C and D are specified by the SAMRAI::solv::PoissonSpecifications object poisson_spec.

Note

The present implementation of this operator requires that damping factor C and diffusivity D be spatially constant and scalar-valued.

See also

setPatchHierarchy

resetLevels

vc_laplace() [1/2]

void IBTK::HierarchyMathOps::vc_laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		double	alpha,
		double	beta,
		int	coef1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	coef1_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		IBTK::VCInterpType	coef1_interp_type = VC_HARMONIC_INTERP,
		int	coef2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	coef2_var = nullptr,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr
	)

Note

This routine is only appropriate for NDIM == 2 and uses node centered coef1. Interally, coef1 will be interpolated onto cell centers when needed. Harmonic interpolation is used by default, but coef1_interp_type = VC_AVERAGE_INTERP will apply arithmetic averaging from nodes to cells

See also

setPatchHierarchy

resetLevels

vc_laplace() [2/2]

void IBTK::HierarchyMathOps::vc_laplace	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		double	alpha,
		double	beta,
		int	coef1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > >	coef1_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src1_ghost_fill,
		double	src1_ghost_fill_time,
		IBTK::VCInterpType	coef1_interp_type = VC_HARMONIC_INTERP,
		int	coef2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	coef2_var = nullptr,
		double	gamma = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr
	)

Note

This routine is only appropriate for NDIM == 3 and uses edge centered coef1. Interally, coef1 will be interpolated onto cell centers when needed. Harmonic interpolation is used by default, but coef1_interp_type = VC_AVERAGE_INTERP will apply arithmetic averaging from edges to cells

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [1/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [2/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [3/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [4/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [5/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [6/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [7/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [8/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [9/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [10/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		double	alpha,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [11/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		double	beta = 0.0,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseMultiply() [12/12]

void IBTK::HierarchyMathOps::pointwiseMultiply	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	dst_var,
		int	alpha_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	alpha_var,
		int	src1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src1_var,
		int	beta_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	beta_var = nullptr,
		int	src2_idx = invalid_index,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src2_var = nullptr,
		int	dst_depth = 0,
		int	src1_depth = 0,
		int	src2_depth = 0,
		int	alpha_depth = 0,
		int	beta_depth = 0
	)

See also

setPatchHierarchy

resetLevels

pointwiseL1Norm() [1/2]

void IBTK::HierarchyMathOps::pointwiseL1Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var
	)

See also

setPatchHierarchy

resetLevels

pointwiseL2Norm() [1/2]

void IBTK::HierarchyMathOps::pointwiseL2Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var
	)

See also

setPatchHierarchy

resetLevels

pointwiseMaxNorm() [1/2]

void IBTK::HierarchyMathOps::pointwiseMaxNorm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	src_var
	)

See also

setPatchHierarchy

resetLevels

pointwiseL1Norm() [2/2]

void IBTK::HierarchyMathOps::pointwiseL1Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var
	)

See also

setPatchHierarchy

resetLevels

pointwiseL2Norm() [2/2]

void IBTK::HierarchyMathOps::pointwiseL2Norm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var
	)

See also

setPatchHierarchy

resetLevels

pointwiseMaxNorm() [2/2]

void IBTK::HierarchyMathOps::pointwiseMaxNorm	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	src_var
	)

See also

setPatchHierarchy

resetLevels

strain_rate() [1/2]

void IBTK::HierarchyMathOps::strain_rate	(	int	dst1_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst1_var,
		int	dst2_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst2_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst1 = strain src (diagonal components). Sets dst2 = strain src (off diagonal components).

Compute the strain of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

strain_rate() [2/2]

void IBTK::HierarchyMathOps::strain_rate	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	dst_var,
		int	src_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > >	src_var,
		SAMRAI::tbox::Pointer< HierarchyGhostCellInterpolation >	src_ghost_fill,
		double	src_ghost_fill_time
	)

Sets dst = strain src.

Compute the strain of a vector field using centered differences.

See also

setPatchHierarchy

resetLevels

enforceHangingNodeConstraints()

void IBTK::HierarchyMathOps::enforceHangingNodeConstraints	(	int	dst_idx,
		SAMRAI::tbox::Pointer< SAMRAI::pdat::NodeVariable< NDIM, double > >	dst_var
	)

Warning

operator=()

HierarchyMathOps& IBTK::HierarchyMathOps::operator= ( const HierarchyMathOps &  that )

privatedelete

Note

This operator is not implemented and should not be used.

Parameters

that	The value to assign to this object.

Returns

A reference to this object.

resetCoarsenOperators()

void IBTK::HierarchyMathOps::resetCoarsenOperators ( )

private

resetRefineOperators()

void IBTK::HierarchyMathOps::resetRefineOperators ( )

private

xeqScheduleOuterfaceRestriction()

void IBTK::HierarchyMathOps::xeqScheduleOuterfaceRestriction ( int  dst_idx, int  src_idx, int  dst_ln  )

private

xeqScheduleOuternodeRestriction()

void IBTK::HierarchyMathOps::xeqScheduleOuternodeRestriction ( int  dst_idx, int  src_idx, int  dst_ln  )

private

xeqScheduleOutersideRestriction()

void IBTK::HierarchyMathOps::xeqScheduleOutersideRestriction ( int  dst_idx, int  src_idx, int  dst_ln  )

private

xeqScheduleOuteredgeRestriction()

void IBTK::HierarchyMathOps::xeqScheduleOuteredgeRestriction ( int  dst_idx, int  src_idx, int  dst_ln  )

private

resetCellWeights()

void IBTK::HierarchyMathOps::resetCellWeights ( int  coarsest_ln, int  finest_ln  )

private

resetFaceWeights()

void IBTK::HierarchyMathOps::resetFaceWeights ( int  coarsest_ln, int  finest_ln  )

private

resetSideWeights()

void IBTK::HierarchyMathOps::resetSideWeights ( int  coarsest_ln, int  finest_ln  )

private

Member Data Documentation

d_object_name

std::string IBTK::HierarchyMathOps::d_object_name

private

d_hierarchy

SAMRAI::tbox::Pointer<SAMRAI::hier::PatchHierarchy<NDIM> > IBTK::HierarchyMathOps::d_hierarchy

private

d_grid_geom

SAMRAI::tbox::Pointer<SAMRAI::geom::CartesianGridGeometry<NDIM> > IBTK::HierarchyMathOps::d_grid_geom

private

d_coarsest_ln

int IBTK::HierarchyMathOps::d_coarsest_ln

private

d_finest_ln

int IBTK::HierarchyMathOps::d_finest_ln

private

d_cached_eulerian_data

SAMRAIDataCache IBTK::HierarchyMathOps::d_cached_eulerian_data

private

d_fc_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::FaceVariable<NDIM, double> > IBTK::HierarchyMathOps::d_fc_var

private

d_nc_s_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::NodeVariable<NDIM, double> > IBTK::HierarchyMathOps::d_nc_s_var

private

d_nc_v_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::NodeVariable<NDIM, double> > IBTK::HierarchyMathOps::d_nc_v_var

private

d_sc_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::SideVariable<NDIM, double> > IBTK::HierarchyMathOps::d_sc_var

private

d_ec_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::EdgeVariable<NDIM, double> > IBTK::HierarchyMathOps::d_ec_var

private

d_oe_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::OuteredgeVariable<NDIM, double> > IBTK::HierarchyMathOps::d_oe_var

private

d_of_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::OuterfaceVariable<NDIM, double> > IBTK::HierarchyMathOps::d_of_var

private

d_on_s_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::OuternodeVariable<NDIM, double> > IBTK::HierarchyMathOps::d_on_s_var

private

d_on_v_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::OuternodeVariable<NDIM, double> > IBTK::HierarchyMathOps::d_on_v_var

private

d_os_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::OutersideVariable<NDIM, double> > IBTK::HierarchyMathOps::d_os_var

private

d_ec_idx

int IBTK::HierarchyMathOps::d_ec_idx = IBTK::invalid_index

private

d_fc_idx

int IBTK::HierarchyMathOps::d_fc_idx = IBTK::invalid_index

private

d_nc_s_idx

int IBTK::HierarchyMathOps::d_nc_s_idx = IBTK::invalid_index

private

d_nc_v_idx

int IBTK::HierarchyMathOps::d_nc_v_idx = IBTK::invalid_index

private

d_oe_idx

int IBTK::HierarchyMathOps::d_oe_idx = IBTK::invalid_index

private

d_sc_idx

int IBTK::HierarchyMathOps::d_sc_idx = IBTK::invalid_index

private

d_of_idx

int IBTK::HierarchyMathOps::d_of_idx = IBTK::invalid_index

private

d_on_s_idx

int IBTK::HierarchyMathOps::d_on_s_idx = IBTK::invalid_index

private

d_on_v_idx

int IBTK::HierarchyMathOps::d_on_v_idx = IBTK::invalid_index

private

d_os_idx

int IBTK::HierarchyMathOps::d_os_idx = IBTK::invalid_index

private

d_coarsen_op_name

std::string IBTK::HierarchyMathOps::d_coarsen_op_name

private

d_of_coarsen_op

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenOperator<NDIM> > IBTK::HierarchyMathOps::d_of_coarsen_op

private

d_on_s_coarsen_op

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenOperator<NDIM> > IBTK::HierarchyMathOps::d_on_s_coarsen_op

private

d_on_v_coarsen_op

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenOperator<NDIM> > IBTK::HierarchyMathOps::d_on_v_coarsen_op

private

d_os_coarsen_op

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenOperator<NDIM> > IBTK::HierarchyMathOps::d_os_coarsen_op

private

d_oe_coarsen_op

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenOperator<NDIM> > IBTK::HierarchyMathOps::d_oe_coarsen_op

private

d_of_coarsen_alg

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenAlgorithm<NDIM> > IBTK::HierarchyMathOps::d_of_coarsen_alg

private

d_on_s_coarsen_alg

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenAlgorithm<NDIM> > IBTK::HierarchyMathOps::d_on_s_coarsen_alg

private

d_on_v_coarsen_alg

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenAlgorithm<NDIM> > IBTK::HierarchyMathOps::d_on_v_coarsen_alg

private

d_os_coarsen_alg

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenAlgorithm<NDIM> > IBTK::HierarchyMathOps::d_os_coarsen_alg

private

d_oe_coarsen_alg

SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenAlgorithm<NDIM> > IBTK::HierarchyMathOps::d_oe_coarsen_alg

private

d_of_coarsen_scheds

std::vector<SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenSchedule<NDIM> > > IBTK::HierarchyMathOps::d_of_coarsen_scheds

private

d_on_s_coarsen_scheds

std::vector<SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenSchedule<NDIM> > > IBTK::HierarchyMathOps::d_on_s_coarsen_scheds

private

d_on_v_coarsen_scheds

std::vector<SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenSchedule<NDIM> > > IBTK::HierarchyMathOps::d_on_v_coarsen_scheds

private

d_os_coarsen_scheds

std::vector<SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenSchedule<NDIM> > > IBTK::HierarchyMathOps::d_os_coarsen_scheds

private

d_oe_coarsen_scheds

std::vector<SAMRAI::tbox::Pointer<SAMRAI::xfer::CoarsenSchedule<NDIM> > > IBTK::HierarchyMathOps::d_oe_coarsen_scheds

private

d_hier_cc_data_ops

SAMRAI::tbox::Pointer<SAMRAI::math::HierarchyCellDataOpsReal<NDIM, double> > IBTK::HierarchyMathOps::d_hier_cc_data_ops

private

d_hier_fc_data_ops

SAMRAI::tbox::Pointer<SAMRAI::math::HierarchyFaceDataOpsReal<NDIM, double> > IBTK::HierarchyMathOps::d_hier_fc_data_ops

private

d_hier_sc_data_ops

SAMRAI::tbox::Pointer<SAMRAI::math::HierarchySideDataOpsReal<NDIM, double> > IBTK::HierarchyMathOps::d_hier_sc_data_ops

private

d_patch_math_ops

PatchMathOps IBTK::HierarchyMathOps::d_patch_math_ops

private

d_context

SAMRAI::tbox::Pointer<SAMRAI::hier::VariableContext> IBTK::HierarchyMathOps::d_context

private

d_wgt_cc_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::CellVariable<NDIM, double> > IBTK::HierarchyMathOps::d_wgt_cc_var

private

d_wgt_fc_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::FaceVariable<NDIM, double> > IBTK::HierarchyMathOps::d_wgt_fc_var

private

d_wgt_sc_var

SAMRAI::tbox::Pointer<SAMRAI::pdat::SideVariable<NDIM, double> > IBTK::HierarchyMathOps::d_wgt_sc_var

private

d_wgt_cc_idx

int IBTK::HierarchyMathOps::d_wgt_cc_idx = IBTK::invalid_index

private

d_wgt_fc_idx

int IBTK::HierarchyMathOps::d_wgt_fc_idx = IBTK::invalid_index

private

d_wgt_sc_idx

int IBTK::HierarchyMathOps::d_wgt_sc_idx = IBTK::invalid_index

private

d_using_wgt_cc

bool IBTK::HierarchyMathOps::d_using_wgt_cc = false

private

d_using_wgt_fc

bool IBTK::HierarchyMathOps::d_using_wgt_fc = false

private

d_using_wgt_sc

bool IBTK::HierarchyMathOps::d_using_wgt_sc = false

private

d_volume

double IBTK::HierarchyMathOps::d_volume = 0.0

private

---

The documentation for this class was generated from the following file:

• ibtk/include/ibtk/HierarchyMathOps.h