Class INSCollocatedHierarchyIntegrator provides a collocated projection method-based solver for the incompressible Navier-Stokes equations on an AMR grid hierarchy. More...

#include </home/runner/work/IBAMR/IBAMR/include/ibamr/INSCollocatedHierarchyIntegrator.h>

Inheritance diagram for IBAMR::INSCollocatedHierarchyIntegrator:

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Public Member Functions
	INSCollocatedHierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true)

	~INSCollocatedHierarchyIntegrator ()

SAMRAI::tbox::Pointer< ConvectiveOperator >	getConvectiveOperator () override

SAMRAI::tbox::Pointer< IBTK::PoissonSolver >	getVelocitySubdomainSolver () override

SAMRAI::tbox::Pointer< IBTK::PoissonSolver >	getPressureSubdomainSolver () override

void	initializeHierarchyIntegrator (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override

void	initializePatchHierarchy (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override

void	preprocessIntegrateHierarchy (double current_time, double new_time, int num_cycles=1) override

void	postprocessIntegrateHierarchy (double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles=1) override

Public Member Functions inherited from IBAMR::INSHierarchyIntegrator
	~INSHierarchyIntegrator ()

void	setViscousTimeSteppingType (TimeSteppingType viscous_time_stepping_type)

TimeSteppingType	getViscousTimeSteppingType () const

void	setConvectiveTimeSteppingType (TimeSteppingType convective_time_stepping_type)

TimeSteppingType	getConvectiveTimeSteppingType () const

void	setInitialConvectiveTimeSteppingType (TimeSteppingType init_convective_time_stepping_type) const

TimeSteppingType	getInitialConvectiveTimeSteppingType () const

void	registerAdvDiffHierarchyIntegrator (SAMRAI::tbox::Pointer< AdvDiffHierarchyIntegrator > adv_diff_hier_integrator)

void	setStokesSpecifications (StokesSpecifications problem_coefs)

const StokesSpecifications *	getStokesSpecifications () const

void	registerPhysicalBoundaryConditions (const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs)

virtual const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &	getVelocityBoundaryConditions () const

virtual SAMRAI::solv::RobinBcCoefStrategy< NDIM > *	getPressureBoundaryConditions () const

void	registerVelocityInitialConditions (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > U_init)

void	registerPressureInitialConditions (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > P_init)

void	registerBodyForceFunction (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > F_fcn)

void	registerFluidSourceFunction (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_fcn)

void	registerVelocityDivergenceFunction (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_fcn)

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	getVelocityVariable () const

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	getPressureVariable () const

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	getBodyForceVariable () const

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	getFluidSourceVariable () const

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	getVelocityDivergenceVariable () const

SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	getAdvectionVelocityVariable () const

std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >	getIntermediateVelocityBoundaryConditions () const

SAMRAI::solv::RobinBcCoefStrategy< NDIM > *	getProjectionBoundaryConditions () const

void	setConvectiveOperatorType (const std::string &op_type)
	Set the convective operator type to be used by the solver.

const std::string &	getConvectiveOperatorType () const
	Get the convective operator type used by the solver.

void	setConvectiveDifferencingType (ConvectiveDifferencingType difference_form)
	Set the convective differencing form to be used by the solver.

ConvectiveDifferencingType	getConvectiveDifferencingType () const
	Get the convective differencing form used by the solver.

void	setCreepingFlow (bool creeping_flow)
	Set whether the integrator solves the time-dependent (creeping) Stokes equations. Otherwise, the integrator solves the time-dependent Navier-Stokes equations.

bool	getCreepingFlow () const
	Get whether the integrator solves the time-dependent (creeping) Stokes equations. Otherwise, the integrator solves the time-dependent Navier-Stokes equations.

void	setConvectiveOperator (SAMRAI::tbox::Pointer< ConvectiveOperator > convective_op)

void	setConvectiveOperatorNeedsInit ()

void	setVelocitySubdomainSolver (SAMRAI::tbox::Pointer< IBTK::PoissonSolver > velocity_solver)

void	setVelocitySubdomainSolverNeedsInit ()

void	setPressureSubdomainSolver (SAMRAI::tbox::Pointer< IBTK::PoissonSolver > pressure_solver)

void	setPressureSubdomainSolverNeedsInit ()

int	getNumberOfCycles () const override

virtual double	getCurrentCFLNumber () const

Public Member Functions inherited from IBTK::HierarchyIntegrator
	HierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart)

	~HierarchyIntegrator ()

const std::string &	getName () const

virtual void	advanceHierarchy (double dt)

double	getMinimumTimeStepSize ()

double	getMaximumTimeStepSize ()

void	synchronizeHierarchyData (VariableContextType ctx_type)

void	resetTimeDependentHierarchyData (double new_time)

void	resetIntegratorToPreadvanceState ()

virtual void	regridHierarchy ()

bool	atRegridPoint () const

double	getIntegratorTime () const

double	getStartTime () const

double	getEndTime () const

int	getIntegratorStep () const

int	getMaxIntegratorSteps () const

bool	stepsRemaining () const

void	updateWorkloadEstimates ()

SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	getPatchHierarchy () const

SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	getGriddingAlgorithm () const

virtual void	registerLoadBalancer (SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer)

int	getWorkloadDataIndex () const

void	registerVisItDataWriter (SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer)

SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > >	getVisItDataWriter () const

void	setupPlotData ()

virtual int	getCurrentCycleNumber () const

virtual double	getCurrentTimeStepSize () const

void	integrateHierarchy (double current_time, double new_time, int cycle_num=0)

void	skipCycle (double current_time, double new_time, int cycle_num=0)

void	registerPreprocessIntegrateHierarchyCallback (PreprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr)

void	registerIntegrateHierarchyCallback (IntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr)

void	registerPostprocessIntegrateHierarchyCallback (PostprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr)

void	registerApplyGradientDetectorCallback (ApplyGradientDetectorCallbackFcnPtr callback, void *ctx=nullptr)

void	registerRegridHierarchyCallback (RegridHierarchyCallbackFcnPtr, void *ctx=nullptr)

void	initializeCompositeHierarchyData (double init_data_time, bool initial_time)

void	initializeLevelData (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(NULL), bool allocate_data=true) override

void	resetHierarchyConfiguration (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override

void	applyGradientDetector (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	getContext (VariableContextType ctx_type) const

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	getCurrentContext () const

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	getNewContext () const

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	getScratchContext () const

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	getPlotContext () const

bool	isAllocatedPatchData (int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const

void	allocatePatchData (int data_idx, double data_time, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const

void	deallocatePatchData (int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const

SAMRAI::tbox::Pointer< HierarchyMathOps >	getHierarchyMathOps () const

void	registerVariable (int &current_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< CartGridFunction > init_fcn=SAMRAI::tbox::Pointer< CartGridFunction >(NULL), const bool register_for_restart=true)

void	registerVariable (int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(NULL), const bool register_for_restart=true)

void	putToDatabase (SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override

Public Member Functions inherited from SAMRAI::mesh::StandardTagAndInitStrategy< NDIM >
virtual double	getLevelDt (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time)

virtual double	advanceLevel (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false)

virtual void	resetTimeDependentData (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined)

virtual void	resetDataToPreadvanceState (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level)

virtual void	applyRichardsonExtrapolation (const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too)

virtual void	coarsenDataForRichardsonExtrapolation (const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance)

Protected Member Functions
void	integrateHierarchySpecialized (double current_time, double new_time, int cycle_num=0) override

double	getStableTimestep (SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch) const override

void	initializeCompositeHierarchyDataSpecialized (double init_data_time, bool initial_time) override

void	initializeLevelDataSpecialized (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) override

void	resetHierarchyConfigurationSpecialized (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override

void	applyGradientDetectorSpecialized (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override

void	setupPlotDataSpecialized () override

void	regridProjection () override

Protected Member Functions inherited from IBAMR::INSHierarchyIntegrator
	INSHierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > U_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > P_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > F_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > Q_var, bool register_for_restart)

	INSHierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > U_var, std::string U_default_coarsen_type, std::string U_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > P_var, std::string P_default_coarsen_type, std::string P_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > F_var, std::string F_default_coarsen_type, std::string F_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > Q_var, std::string Q_default_coarsen_type, std::string Q_default_refine_type, bool register_for_restart)

virtual void	updateCurrentCFLNumber (const int data_idx, const double dt)

double	getMaximumTimeStepSizeSpecialized () override

double	getStableTimestep (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchLevel< NDIM > > level) const

void	putToDatabaseSpecialized (SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override

Protected Member Functions inherited from IBTK::HierarchyIntegrator
virtual void	regridHierarchyBeginSpecialized ()

virtual void	regridHierarchyEndSpecialized ()

virtual double	getMinimumTimeStepSizeSpecialized ()

virtual void	synchronizeHierarchyDataSpecialized (VariableContextType ctx_type)

virtual void	resetTimeDependentHierarchyDataSpecialized (double new_time)

virtual void	resetIntegratorToPreadvanceStateSpecialized ()

virtual bool	atRegridPointSpecialized () const

virtual void	addWorkloadEstimate (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx)

virtual void	executePreprocessIntegrateHierarchyCallbackFcns (double current_time, double new_time, int num_cycles)

virtual void	executeIntegrateHierarchyCallbackFcns (double current_time, double new_time, int cycle_num)

virtual void	executePostprocessIntegrateHierarchyCallbackFcns (double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles)

virtual void	executeApplyGradientDetectorCallbackFcns (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too)

virtual void	executeRegridHierarchyCallbackFcns (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time)

void	registerGhostfillRefineAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr)

void	registerProlongRefineAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr)

void	registerCoarsenAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr)

SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > >	getGhostfillRefineAlgorithm (const std::string &name) const

SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > >	getProlongRefineAlgorithm (const std::string &name) const

SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > >	getCoarsenAlgorithm (const std::string &name) const

const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	getGhostfillRefineSchedules (const std::string &name) const

const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > &	getProlongRefineSchedules (const std::string &name) const

const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > &	getCoarsenSchedules (const std::string &name) const

void	registerChildHierarchyIntegrator (HierarchyIntegrator *child_integrator)

void	registerParentHierarchyIntegrator (HierarchyIntegrator *parent_integrator)

SAMRAI::tbox::Pointer< HierarchyMathOps >	buildHierarchyMathOps (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy)

void	setupTagBuffer (SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg)

bool	regriddingHierarchy () const

bool	atRegridTimeStep () const

Additional Inherited Members
Public Types inherited from IBTK::HierarchyIntegrator
using	PreprocessIntegrateHierarchyCallbackFcnPtr = void()(double current_time, double new_time, int num_cycles, void ctx)

using	IntegrateHierarchyCallbackFcnPtr = void()(double current_time, double new_time, int cycle_num, void ctx)

using	PostprocessIntegrateHierarchyCallbackFcnPtr = void()(double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles, void ctx)

using	ApplyGradientDetectorCallbackFcnPtr = void()(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too, void ctx)

using	RegridHierarchyCallbackFcnPtr = void()(SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time, void ctx)

Protected Attributes inherited from IBAMR::INSHierarchyIntegrator
bool	d_integrator_is_initialized = false

TimeSteppingType	d_viscous_time_stepping_type = TRAPEZOIDAL_RULE

TimeSteppingType	d_convective_time_stepping_type = ADAMS_BASHFORTH

TimeSteppingType	d_init_convective_time_stepping_type = MIDPOINT_RULE

StokesSpecifications	d_problem_coefs

std::vector< SAMRAI::tbox::Pointer< AdvDiffHierarchyIntegrator > >	d_adv_diff_hier_integrators

SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > >	d_U_adv_diff_var

double	d_cfl_current = std::numeric_limits<double>::quiet_NaN()

double	d_cfl_max = 1.0

bool	d_using_vorticity_tagging = false

SAMRAI::tbox::Array< double >	d_Omega_rel_thresh

SAMRAI::tbox::Array< double >	d_Omega_abs_thresh

double	d_Omega_max = 0.0

bool	d_normalize_pressure = false

bool	d_normalize_velocity = false

bool	d_creeping_flow = false

double	d_regrid_max_div_growth_factor = 1.1

double	d_U_scale = 1.0

double	d_P_scale = 1.0

double	d_F_scale = 1.0

double	d_Q_scale = 1.0

double	d_Omega_scale = 1.0

double	d_Div_U_scale = 1.0

double	d_EE_scale = 1.0

bool	d_output_U = true

bool	d_output_P = true

bool	d_output_F = false

bool	d_output_Q = false

bool	d_output_Omega = true

bool	d_output_Div_U = true

bool	d_output_EE = false

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	d_U_var

std::string	d_U_coarsen_type = "CONSERVATIVE_COARSEN"

std::string	d_U_refine_type = "CONSERVATIVE_LINEAR_REFINE"

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	d_P_var

std::string	d_P_coarsen_type = "CONSERVATIVE_COARSEN"

std::string	d_P_refine_type = "LINEAR_REFINE"

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	d_F_var

std::string	d_F_coarsen_type = "CONSERVATIVE_COARSEN"

std::string	d_F_refine_type = "CONSERVATIVE_LINEAR_REFINE"

SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > >	d_Q_var

std::string	d_Q_coarsen_type = "CONSERVATIVE_COARSEN"

std::string	d_Q_refine_type = "CONSTANT_REFINE"

SAMRAI::tbox::Pointer< IBTK::CartGridFunction >	d_U_init

SAMRAI::tbox::Pointer< IBTK::CartGridFunction >	d_P_init

SAMRAI::solv::LocationIndexRobinBcCoefs< NDIM >	d_default_bc_coefs

std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >	d_bc_coefs

std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >	d_U_bc_coefs

std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * >	d_U_star_bc_coefs

TractionBcType	d_traction_bc_type = TRACTION

SAMRAI::solv::RobinBcCoefStrategy< NDIM > *	d_P_bc_coef

std::unique_ptr< SAMRAI::solv::RobinBcCoefStrategy< NDIM > >	d_Phi_bc_coef

SAMRAI::tbox::Pointer< IBTK::CartGridFunction >	d_F_fcn

SAMRAI::tbox::Pointer< IBTK::CartGridFunction >	d_Q_fcn

SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation >	d_U_bdry_bc_fill_op

SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation >	d_P_bdry_bc_fill_op

SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation >	d_Q_bdry_bc_fill_op

SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation >	d_no_fill_op

bool	d_use_div_sink_drag_term = false

int	d_coarsest_reset_ln

int	d_finest_reset_ln

std::string	d_convective_op_type = "DEFAULT"

ConvectiveDifferencingType	d_convective_difference_form = ADVECTIVE

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_convective_op_input_db

SAMRAI::tbox::Pointer< ConvectiveOperator >	d_convective_op

bool	d_convective_op_needs_init

std::string	d_velocity_solver_type

std::string	d_velocity_precond_type

std::string	d_velocity_sub_precond_type

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_velocity_solver_db

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_velocity_precond_db

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_velocity_sub_precond_db

SAMRAI::tbox::Pointer< IBTK::PoissonSolver >	d_velocity_solver

bool	d_velocity_solver_needs_init

std::string	d_pressure_solver_type

std::string	d_pressure_precond_type

std::string	d_pressure_sub_precond_type

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_pressure_solver_db

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_pressure_precond_db

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_pressure_sub_precond_db

SAMRAI::tbox::Pointer< IBTK::PoissonSolver >	d_pressure_solver

bool	d_pressure_solver_needs_init

std::string	d_regrid_projection_solver_type

std::string	d_regrid_projection_precond_type

std::string	d_regrid_projection_sub_precond_type

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_regrid_projection_solver_db

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_regrid_projection_precond_db

SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	d_regrid_projection_sub_precond_db

Protected Attributes inherited from IBTK::HierarchyIntegrator
std::string	d_object_name

bool	d_registered_for_restart = false

SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	d_hierarchy

SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	d_gridding_alg

SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > >	d_load_balancer

SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > >	d_workload_var

int	d_workload_idx = IBTK::invalid_index

bool	d_hierarchy_is_initialized = false

bool	d_may_need_to_reset_hierarchy_configuration = false

HierarchyIntegrator *	d_parent_integrator = nullptr

std::set< HierarchyIntegrator * >	d_child_integrators

SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > >	d_visit_writer

double	d_integrator_time = std::numeric_limits<double>::quiet_NaN()

double	d_start_time = 0.0

double	d_end_time = std::numeric_limits<double>::max()

double	d_dt_init = std::numeric_limits<double>::max()

double	d_dt_min = 0.0

double	d_dt_max = std::numeric_limits<double>::max()

double	d_dt_growth_factor = 2.0

int	d_integrator_step = 0

int	d_max_integrator_steps = std::numeric_limits<int>::max()

std::deque< double >	d_dt_previous

int	d_num_cycles = 1

int	d_current_num_cycles = -1

int	d_current_cycle_num = -1

double	d_current_dt = std::numeric_limits<double>::quiet_NaN()

int	d_regrid_interval = 1

RegridMode	d_regrid_mode = STANDARD

bool	d_enable_logging = false

bool	d_enable_logging_solver_iterations = false

std::string	d_bdry_extrap_type = "LINEAR"

SAMRAI::tbox::Array< int >	d_tag_buffer = { 0 }

SAMRAI::tbox::Pointer< HierarchyMathOps >	d_hier_math_ops

bool	d_manage_hier_math_ops = true

std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > >	d_state_variables

std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > >	d_scratch_variables

std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > >	d_copy_scratch_to_current_fast

std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > >	d_copy_scratch_to_current_slow

SAMRAI::hier::ComponentSelector	d_current_data

SAMRAI::hier::ComponentSelector	d_new_data

SAMRAI::hier::ComponentSelector	d_scratch_data

SAMRAI::hier::ComponentSelector	d_plot_data

std::map< SAMRAI::hier::Variable< NDIM > *, SAMRAI::tbox::Pointer< CartGridFunction > >	d_state_var_init_fcns

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	d_current_context

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	d_new_context

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	d_scratch_context

SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >	d_plot_context

SAMRAI::hier::ComponentSelector	d_fill_after_regrid_bc_idxs

SAMRAI::xfer::RefineAlgorithm< NDIM >	d_fill_after_regrid_prolong_alg

std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > >	d_fill_after_regrid_phys_bdry_bc_op

std::vector< PreprocessIntegrateHierarchyCallbackFcnPtr >	d_preprocess_integrate_hierarchy_callbacks

std::vector< void * >	d_preprocess_integrate_hierarchy_callback_ctxs

std::vector< IntegrateHierarchyCallbackFcnPtr >	d_integrate_hierarchy_callbacks

std::vector< void * >	d_integrate_hierarchy_callback_ctxs

std::vector< PostprocessIntegrateHierarchyCallbackFcnPtr >	d_postprocess_integrate_hierarchy_callbacks

std::vector< void * >	d_postprocess_integrate_hierarchy_callback_ctxs

std::vector< ApplyGradientDetectorCallbackFcnPtr >	d_apply_gradient_detector_callbacks

std::vector< void * >	d_apply_gradient_detector_callback_ctxs

std::vector< RegridHierarchyCallbackFcnPtr >	d_regrid_hierarchy_callbacks

std::vector< void * >	d_regrid_hierarchy_callback_ctxs

Static Protected Attributes inherited from IBTK::HierarchyIntegrator
static const std::string	SYNCH_CURRENT_DATA_ALG = "SYNCH_CURRENT_DATA"

static const std::string	SYNCH_NEW_DATA_ALG = "SYNCH_NEW_DATA"

Detailed Description

Class INSCollocatedHierarchyIntegrator provides a collocated projection method-based solver for the incompressible Navier-Stokes equations on an AMR grid hierarchy.

Constructor & Destructor Documentation

◆ INSCollocatedHierarchyIntegrator()

IBAMR::INSCollocatedHierarchyIntegrator::INSCollocatedHierarchyIntegrator	(	std::string	object_name,
		SAMRAI::tbox::Pointer< SAMRAI::tbox::Database >	input_db,
		bool	register_for_restart = `true`
	)

The constructor for class INSCollocatedHierarchyIntegrator sets some default values, reads in configuration information from input and restart databases, and registers the integrator object with the restart manager when requested.

◆ ~INSCollocatedHierarchyIntegrator()

IBAMR::INSCollocatedHierarchyIntegrator::~INSCollocatedHierarchyIntegrator ( )

The destructor for class INSCollocatedHierarchyIntegrator unregisters the integrator object with the restart manager when the object is so registered.

Member Function Documentation

◆ applyGradientDetectorSpecialized()

void IBAMR::INSCollocatedHierarchyIntegrator::applyGradientDetectorSpecialized	(	SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	error_data_time,
		int	tag_index,
		bool	initial_time,
		bool	uses_richardson_extrapolation_too
	)

overrideprotectedvirtual

Set integer tags to "one" in cells where refinement of the given level should occur according to the magnitude of the fluid vorticity.

Reimplemented from IBTK::HierarchyIntegrator.

◆ getConvectiveOperator()

Pointer< ConvectiveOperator > IBAMR::INSCollocatedHierarchyIntegrator::getConvectiveOperator ( )

overridevirtual

Get the convective operator being used by this solver class.

If the time integrator is configured to solve the time-dependent (creeping) Stokes equations, then the returned pointer will be NULL.

If the convective operator has not already been constructed, and if the time integrator is not configured to solve the time-dependent (creeping) Stokes equations, then this function will initialize the default type of convective operator, which may be set in the class input database.

Implements IBAMR::INSHierarchyIntegrator.

◆ getPressureSubdomainSolver()

Pointer< PoissonSolver > IBAMR::INSCollocatedHierarchyIntegrator::getPressureSubdomainSolver ( )

overridevirtual

Get the subdomain solver for the pressure subsystem. Such solvers can be useful in constructing block preconditioners.

Implements IBAMR::INSHierarchyIntegrator.

◆ getStableTimestep()

double IBAMR::INSCollocatedHierarchyIntegrator::getStableTimestep ( SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch ) const

overrideprotectedvirtual

Determine the largest stable timestep on an individual patch.

Implements IBAMR::INSHierarchyIntegrator.

◆ getVelocitySubdomainSolver()

Pointer< PoissonSolver > IBAMR::INSCollocatedHierarchyIntegrator::getVelocitySubdomainSolver ( )

overridevirtual

Get the subdomain solver for the velocity subsystem. Such solvers can be useful in constructing block preconditioners.

Implements IBAMR::INSHierarchyIntegrator.

◆ initializeCompositeHierarchyDataSpecialized()

void IBAMR::INSCollocatedHierarchyIntegrator::initializeCompositeHierarchyDataSpecialized	(	double	init_data_time,
		bool	initial_time
	)

overrideprotectedvirtual

Perform data initialization after the entire hierarchy has been constructed.

Reimplemented from IBTK::HierarchyIntegrator.

◆ initializeHierarchyIntegrator()

void IBAMR::INSCollocatedHierarchyIntegrator::initializeHierarchyIntegrator	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	gridding_alg
	)

overridevirtual

Initialize the variables, basic communications algorithms, solvers, and other data structures used by this time integrator object.

This method is called automatically by initializePatchHierarchy() prior to the construction of the patch hierarchy. It is also possible for users to make an explicit call to initializeHierarchyIntegrator() prior to calling initializePatchHierarchy().

Implements IBTK::HierarchyIntegrator.

◆ initializeLevelDataSpecialized()

void IBAMR::INSCollocatedHierarchyIntegrator::initializeLevelDataSpecialized	(	SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > >	hierarchy,
		int	level_number,
		double	init_data_time,
		bool	can_be_refined,
		bool	initial_time,
		SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >	old_level,
		bool	allocate_data
	)

overrideprotectedvirtual

Initialize data on a new level after it is inserted into an AMR patch hierarchy by the gridding algorithm.

Reimplemented from IBTK::HierarchyIntegrator.

◆ initializePatchHierarchy()

void IBAMR::INSCollocatedHierarchyIntegrator::initializePatchHierarchy	(	SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > >	hierarchy,
		SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > >	gridding_alg
	)

overridevirtual

Initialize the AMR patch hierarchy and data defined on the hierarchy at the start of a computation. If the computation is begun from a restart file, the patch hierarchy and patch data are read from the hierarchy database. Otherwise, the patch hierarchy and patch data are initialized by the gridding algorithm associated with the integrator object.

The implementation of this function assumes that the hierarchy exists upon entry to the function, but that it contains no patch levels. On return from this function, the state of the integrator object will be such that it is possible to step through time via the advanceHierarchy() function.

Reimplemented from IBTK::HierarchyIntegrator.

◆ integrateHierarchySpecialized()

void IBAMR::INSCollocatedHierarchyIntegrator::integrateHierarchySpecialized	(	double	current_time,
		double	new_time,
		int	cycle_num = `0`
	)

overrideprotectedvirtual

Synchronously advance each level in the hierarchy over the given time increment.

Implements IBTK::HierarchyIntegrator.

◆ postprocessIntegrateHierarchy()

void IBAMR::INSCollocatedHierarchyIntegrator::postprocessIntegrateHierarchy	(	double	current_time,
		double	new_time,
		bool	skip_synchronize_new_state_data,
		int	num_cycles = `1`
	)

overridevirtual

Clean up data following call(s) to integrateHierarchy().

Reimplemented from IBAMR::INSHierarchyIntegrator.

◆ preprocessIntegrateHierarchy()

void IBAMR::INSCollocatedHierarchyIntegrator::preprocessIntegrateHierarchy	(	double	current_time,
		double	new_time,
		int	num_cycles = `1`
	)

overridevirtual

Prepare to advance the data from current_time to new_time.

Reimplemented from IBTK::HierarchyIntegrator.

◆ regridProjection()

void IBAMR::INSCollocatedHierarchyIntegrator::regridProjection ( )

overrideprotectedvirtual

Project the velocity field following a regridding operation.

Implements IBAMR::INSHierarchyIntegrator.

◆ resetHierarchyConfigurationSpecialized()

void IBAMR::INSCollocatedHierarchyIntegrator::resetHierarchyConfigurationSpecialized	(	SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > >	hierarchy,
		int	coarsest_level,
		int	finest_level
	)

overrideprotectedvirtual

Reset cached hierarchy dependent data.

Reimplemented from IBTK::HierarchyIntegrator.

◆ setupPlotDataSpecialized()

void IBAMR::INSCollocatedHierarchyIntegrator::setupPlotDataSpecialized ( )

overrideprotectedvirtual

Prepare variables for plotting.

Reimplemented from IBTK::HierarchyIntegrator.

The documentation for this class was generated from the following files:

/home/runner/work/IBAMR/IBAMR/include/ibamr/INSCollocatedHierarchyIntegrator.h
/home/runner/work/IBAMR/IBAMR/src/navier_stokes/INSCollocatedHierarchyIntegrator.cpp

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ INSCollocatedHierarchyIntegrator()

◆ ~INSCollocatedHierarchyIntegrator()

Member Function Documentation

◆ applyGradientDetectorSpecialized()

◆ getConvectiveOperator()

◆ getPressureSubdomainSolver()

◆ getStableTimestep()

◆ getVelocitySubdomainSolver()

◆ initializeCompositeHierarchyDataSpecialized()

◆ initializeHierarchyIntegrator()

◆ initializeLevelDataSpecialized()

◆ initializePatchHierarchy()

◆ integrateHierarchySpecialized()

◆ postprocessIntegrateHierarchy()

◆ preprocessIntegrateHierarchy()

◆ regridProjection()

◆ resetHierarchyConfigurationSpecialized()

◆ setupPlotDataSpecialized()