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| INSVCStaggeredHierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart=true) |
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| ~INSVCStaggeredHierarchyIntegrator () |
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SAMRAI::tbox::Pointer< ConvectiveOperator > | getConvectiveOperator () override |
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SAMRAI::tbox::Pointer< IBTK::PoissonSolver > | getVelocitySubdomainSolver () override |
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SAMRAI::tbox::Pointer< IBTK::PoissonSolver > | getPressureSubdomainSolver () override |
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void | setStokesSolver (SAMRAI::tbox::Pointer< StaggeredStokesSolver > stokes_solver) |
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SAMRAI::tbox::Pointer< StaggeredStokesSolver > | getStokesSolver () |
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void | setStokesSolverNeedsInit () |
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virtual void | initializeHierarchyIntegrator (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override |
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virtual void | initializePatchHierarchy (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) override |
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virtual void | preprocessIntegrateHierarchy (double current_time, double new_time, int num_cycles=1) override |
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virtual void | postprocessIntegrateHierarchy (double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles=1) override |
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void | removeNullSpace (const SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > &sol_vec) |
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void | registerMassDensityVariable (SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > rho_var) |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getMassDensityVariable () const |
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void | registerViscosityVariable (SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > mu_var) |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getViscosityVariable () const |
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void | setDensityVCInterpolationType (const IBTK::VCInterpType vc_interp_type) |
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void | setViscosityVCInterpolationType (const IBTK::VCInterpType vc_interp_type) |
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void | registerResetFluidDensityFcn (ResetFluidPropertiesFcnPtr callback, void *ctx) |
| Register function to reset fluid density.
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void | registerResetFluidViscosityFcn (ResetFluidPropertiesFcnPtr callback, void *ctx) |
| Register function to reset fluid viscosity.
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virtual void | registerBrinkmanPenalizationStrategy (SAMRAI::tbox::Pointer< IBAMR::BrinkmanPenalizationStrategy > brinkman_force) |
| Register BrinkmanPenalizationStrategy objects to add Brinkman penalization term in the momentum equation.
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void | registerMassDensityInitialConditions (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > rho_init_fcn) |
| Supply initial conditions for the density field, if maintained by the fluid integrator.
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void | registerViscosityInitialConditions (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > mu_init_fcn) |
| Supply initial conditions for the viscosity field, if maintained by the fluid integrator.
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virtual void | registerMassDensityBoundaryConditions (SAMRAI::solv::RobinBcCoefStrategy< NDIM > *rho_bc_coef)=0 |
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void | registerViscosityBoundaryConditions (SAMRAI::solv::RobinBcCoefStrategy< NDIM > *mu_bc_coef) |
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void | setTransportedViscosityVariable (SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > mu_adv_diff_var, unsigned int adv_diff_idx=0) |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | getTransportedViscosityVariable () const |
| Get the transported viscosity variable that is being manintained by an advection-diffusion integrator.
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int | getLinearOperatorRhoPatchDataIndex () const |
| Get the side-centered density patch data index, which will always be the newest one used in the linear operator i.e. rho_sc in rho_sc*u^{n+1} term. More...
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bool | rhoIsConstant () const |
| Get whether or not density is constant.
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bool | muIsConstant () const |
| Get whether or not viscosity is constant.
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int | getLinearOperatorMuPatchDataIndex () const |
| Get the cell-centered viscosity patch data index, which will always be the newest one used in the linear operator. More...
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int | getInterpolatedLinearOperatorMuPatchDataIndex () const |
| Get the interpolated viscosity patch data index, which will always be the newest one used in the linear operator. More...
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SAMRAI::tbox::Array< double > | getScalingFactor () const |
| Get the scaling factor used for A, p and u_rhs.
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SAMRAI::solv::RobinBcCoefStrategy< NDIM > * | getViscosityBoundaryConditions () const |
| Get the viscosity boundary conditions.
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const std::vector< SAMRAI::tbox::Pointer< IBAMR::BrinkmanPenalizationStrategy > > & | getBrinkmanPenalizationStrategy () const |
| Get the Brinkman penalization objects registered with this class.
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getOldVelocityVariable () const |
| Get "old" velocity variable.
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| ~INSHierarchyIntegrator () |
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void | setViscousTimeSteppingType (TimeSteppingType viscous_time_stepping_type) |
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TimeSteppingType | getViscousTimeSteppingType () const |
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void | setConvectiveTimeSteppingType (TimeSteppingType convective_time_stepping_type) |
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TimeSteppingType | getConvectiveTimeSteppingType () const |
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void | setInitialConvectiveTimeSteppingType (TimeSteppingType init_convective_time_stepping_type) const |
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TimeSteppingType | getInitialConvectiveTimeSteppingType () const |
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void | registerAdvDiffHierarchyIntegrator (SAMRAI::tbox::Pointer< AdvDiffHierarchyIntegrator > adv_diff_hier_integrator) |
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void | setStokesSpecifications (StokesSpecifications problem_coefs) |
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const StokesSpecifications * | getStokesSpecifications () const |
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void | registerPhysicalBoundaryConditions (const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > &bc_coefs) |
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virtual const std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > & | getVelocityBoundaryConditions () const |
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virtual SAMRAI::solv::RobinBcCoefStrategy< NDIM > * | getPressureBoundaryConditions () const |
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void | registerVelocityInitialConditions (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > U_init) |
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void | registerPressureInitialConditions (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > P_init) |
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void | registerBodyForceFunction (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > F_fcn) |
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void | registerFluidSourceFunction (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_fcn) |
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void | registerVelocityDivergenceFunction (SAMRAI::tbox::Pointer< IBTK::CartGridFunction > Q_fcn) |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getVelocityVariable () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getPressureVariable () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getBodyForceVariable () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getFluidSourceVariable () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | getVelocityDivergenceVariable () const |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > | getAdvectionVelocityVariable () const |
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std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > | getIntermediateVelocityBoundaryConditions () const |
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SAMRAI::solv::RobinBcCoefStrategy< NDIM > * | getProjectionBoundaryConditions () const |
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void | setConvectiveOperatorType (const std::string &op_type) |
| Set the convective operator type to be used by the solver.
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const std::string & | getConvectiveOperatorType () const |
| Get the convective operator type used by the solver.
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void | setConvectiveDifferencingType (ConvectiveDifferencingType difference_form) |
| Set the convective differencing form to be used by the solver.
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ConvectiveDifferencingType | getConvectiveDifferencingType () const |
| Get the convective differencing form used by the solver.
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void | setCreepingFlow (bool creeping_flow) |
| Set whether the integrator solves the time-dependent (creeping) Stokes equations. Otherwise, the integrator solves the time-dependent Navier-Stokes equations.
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bool | getCreepingFlow () const |
| Get whether the integrator solves the time-dependent (creeping) Stokes equations. Otherwise, the integrator solves the time-dependent Navier-Stokes equations.
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void | setConvectiveOperator (SAMRAI::tbox::Pointer< ConvectiveOperator > convective_op) |
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void | setConvectiveOperatorNeedsInit () |
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void | setVelocitySubdomainSolver (SAMRAI::tbox::Pointer< IBTK::PoissonSolver > velocity_solver) |
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void | setVelocitySubdomainSolverNeedsInit () |
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void | setPressureSubdomainSolver (SAMRAI::tbox::Pointer< IBTK::PoissonSolver > pressure_solver) |
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void | setPressureSubdomainSolverNeedsInit () |
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int | getNumberOfCycles () const override |
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virtual double | getCurrentCFLNumber () const |
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| HierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, bool register_for_restart) |
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| ~HierarchyIntegrator () |
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const std::string & | getName () const |
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virtual void | advanceHierarchy (double dt) |
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double | getMinimumTimeStepSize () |
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double | getMaximumTimeStepSize () |
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void | synchronizeHierarchyData (VariableContextType ctx_type) |
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void | resetTimeDependentHierarchyData (double new_time) |
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void | resetIntegratorToPreadvanceState () |
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virtual void | regridHierarchy () |
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bool | atRegridPoint () const |
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double | getIntegratorTime () const |
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double | getStartTime () const |
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double | getEndTime () const |
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int | getIntegratorStep () const |
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int | getMaxIntegratorSteps () const |
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bool | stepsRemaining () const |
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void | updateWorkloadEstimates () |
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SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > | getPatchHierarchy () const |
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SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > | getGriddingAlgorithm () const |
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virtual void | registerLoadBalancer (SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > load_balancer) |
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int | getWorkloadDataIndex () const |
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void | registerVisItDataWriter (SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > visit_writer) |
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SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > | getVisItDataWriter () const |
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void | setupPlotData () |
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virtual int | getCurrentCycleNumber () const |
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virtual double | getCurrentTimeStepSize () const |
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void | integrateHierarchy (double current_time, double new_time, int cycle_num=0) |
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void | skipCycle (double current_time, double new_time, int cycle_num=0) |
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void | registerPreprocessIntegrateHierarchyCallback (PreprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) |
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void | registerIntegrateHierarchyCallback (IntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) |
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void | registerPostprocessIntegrateHierarchyCallback (PostprocessIntegrateHierarchyCallbackFcnPtr callback, void *ctx=nullptr) |
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void | registerApplyGradientDetectorCallback (ApplyGradientDetectorCallbackFcnPtr callback, void *ctx=nullptr) |
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void | registerRegridHierarchyCallback (RegridHierarchyCallbackFcnPtr, void *ctx=nullptr) |
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void | initializeCompositeHierarchyData (double init_data_time, bool initial_time) |
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void | initializeLevelData (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level=SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > >(NULL), bool allocate_data=true) override |
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void | resetHierarchyConfiguration (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override |
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void | applyGradientDetector (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override |
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SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | getContext (VariableContextType ctx_type) const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | getCurrentContext () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | getNewContext () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | getScratchContext () const |
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SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | getPlotContext () const |
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bool | isAllocatedPatchData (int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const |
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void | allocatePatchData (int data_idx, double data_time, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const |
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void | deallocatePatchData (int data_idx, int coarsest_ln=invalid_level_number, int finest_ln=invalid_level_number) const |
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SAMRAI::tbox::Pointer< HierarchyMathOps > | getHierarchyMathOps () const |
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void | registerVariable (int ¤t_idx, int &new_idx, int &scratch_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &scratch_ghosts=SAMRAI::hier::IntVector< NDIM >(0), const std::string &coarsen_name="NO_COARSEN", const std::string &refine_name="NO_REFINE", SAMRAI::tbox::Pointer< CartGridFunction > init_fcn=SAMRAI::tbox::Pointer< CartGridFunction >(NULL), const bool register_for_restart=true) |
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void | registerVariable (int &idx, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > variable, const SAMRAI::hier::IntVector< NDIM > &ghosts=SAMRAI::hier::IntVector< NDIM >(0), SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > ctx=SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext >(NULL), const bool register_for_restart=true) |
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void | putToDatabase (SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override |
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Public Member Functions inherited from SAMRAI::mesh::StandardTagAndInitStrategy< NDIM > |
virtual double | getLevelDt (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double dt_time, const bool initial_time) |
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virtual double | advanceLevel (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const tbox::Pointer< hier::BasePatchHierarchy< NDIM > > hierarchy, const double current_time, const double new_time, const bool first_step, const bool last_step, const bool regrid_advance=false) |
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virtual void | resetTimeDependentData (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level, const double new_time, const bool can_be_refined) |
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virtual void | resetDataToPreadvanceState (const tbox::Pointer< hier::BasePatchLevel< NDIM > > level) |
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virtual void | applyRichardsonExtrapolation (const tbox::Pointer< hier::PatchLevel< NDIM > > level, const double error_data_time, const int tag_index, const double deltat, const int error_coarsen_ratio, const bool initial_time, const bool uses_gradient_detector_too) |
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virtual void | coarsenDataForRichardsonExtrapolation (const tbox::Pointer< hier::PatchHierarchy< NDIM > > hierarchy, const int level_number, const tbox::Pointer< hier::PatchLevel< NDIM > > coarser_level, const double coarsen_data_time, const bool before_advance) |
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double | getStableTimestep (SAMRAI::tbox::Pointer< SAMRAI::hier::Patch< NDIM > > patch) const override |
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void | regridHierarchyBeginSpecialized () override |
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void | regridHierarchyEndSpecialized () override |
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void | initializeCompositeHierarchyDataSpecialized (double init_data_time, bool initial_time) override |
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virtual void | initializeLevelDataSpecialized (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double init_data_time, bool can_be_refined, bool initial_time, SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchLevel< NDIM > > old_level, bool allocate_data) override |
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virtual void | resetHierarchyConfigurationSpecialized (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int coarsest_level, int finest_level) override |
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virtual void | applyGradientDetectorSpecialized (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) override |
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virtual void | setupPlotDataSpecialized () override |
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void | copySideToFace (const int U_fc_idx, const int U_sc_idx, SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) |
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| INSHierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > U_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > P_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > F_var, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > Q_var, bool register_for_restart) |
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| INSHierarchyIntegrator (std::string object_name, SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > input_db, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > U_var, std::string U_default_coarsen_type, std::string U_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > P_var, std::string P_default_coarsen_type, std::string P_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > F_var, std::string F_default_coarsen_type, std::string F_default_refine_type, SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > Q_var, std::string Q_default_coarsen_type, std::string Q_default_refine_type, bool register_for_restart) |
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virtual void | regridProjection ()=0 |
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virtual void | updateCurrentCFLNumber (const int data_idx, const double dt) |
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double | getMaximumTimeStepSizeSpecialized () override |
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double | getStableTimestep (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchLevel< NDIM > > level) const |
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void | putToDatabaseSpecialized (SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > db) override |
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virtual void | integrateHierarchySpecialized (double current_time, double new_time, int cycle_num=0)=0 |
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virtual double | getMinimumTimeStepSizeSpecialized () |
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virtual void | synchronizeHierarchyDataSpecialized (VariableContextType ctx_type) |
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virtual void | resetTimeDependentHierarchyDataSpecialized (double new_time) |
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virtual void | resetIntegratorToPreadvanceStateSpecialized () |
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virtual bool | atRegridPointSpecialized () const |
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virtual void | addWorkloadEstimate (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy, const int workload_data_idx) |
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virtual void | executePreprocessIntegrateHierarchyCallbackFcns (double current_time, double new_time, int num_cycles) |
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virtual void | executeIntegrateHierarchyCallbackFcns (double current_time, double new_time, int cycle_num) |
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virtual void | executePostprocessIntegrateHierarchyCallbackFcns (double current_time, double new_time, bool skip_synchronize_new_state_data, int num_cycles) |
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virtual void | executeApplyGradientDetectorCallbackFcns (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, int level_number, double error_data_time, int tag_index, bool initial_time, bool uses_richardson_extrapolation_too) |
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virtual void | executeRegridHierarchyCallbackFcns (SAMRAI::tbox::Pointer< SAMRAI::hier::BasePatchHierarchy< NDIM > > hierarchy, double data_time, bool initial_time) |
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void | registerGhostfillRefineAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > ghostfill_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > ghostfill_patch_strategy=nullptr) |
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void | registerProlongRefineAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > prolong_alg, std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > prolong_patch_strategy=nullptr) |
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void | registerCoarsenAlgorithm (const std::string &name, SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > coarsen_alg, std::unique_ptr< SAMRAI::xfer::CoarsenPatchStrategy< NDIM > > coarsen_patch_strategy=nullptr) |
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SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > | getGhostfillRefineAlgorithm (const std::string &name) const |
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SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineAlgorithm< NDIM > > | getProlongRefineAlgorithm (const std::string &name) const |
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SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenAlgorithm< NDIM > > | getCoarsenAlgorithm (const std::string &name) const |
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const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > & | getGhostfillRefineSchedules (const std::string &name) const |
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const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::RefineSchedule< NDIM > > > & | getProlongRefineSchedules (const std::string &name) const |
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const std::vector< SAMRAI::tbox::Pointer< SAMRAI::xfer::CoarsenSchedule< NDIM > > > & | getCoarsenSchedules (const std::string &name) const |
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void | registerChildHierarchyIntegrator (HierarchyIntegrator *child_integrator) |
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void | registerParentHierarchyIntegrator (HierarchyIntegrator *parent_integrator) |
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SAMRAI::tbox::Pointer< HierarchyMathOps > | buildHierarchyMathOps (SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > hierarchy) |
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void | setupTagBuffer (SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > gridding_alg) |
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bool | regriddingHierarchy () const |
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bool | atRegridTimeStep () const |
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double | d_div_U_norm_1_pre = 0.0 |
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double | d_div_U_norm_2_pre = 0.0 |
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double | d_div_U_norm_oo_pre = 0.0 |
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double | d_div_U_norm_1_post = 0.0 |
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double | d_div_U_norm_2_post = 0.0 |
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double | d_div_U_norm_oo_post = 0.0 |
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bool | d_do_regrid_projection = false |
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SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyCellDataOpsReal< NDIM, double > > | d_hier_cc_data_ops |
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SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyFaceDataOpsReal< NDIM, double > > | d_hier_fc_data_ops |
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SAMRAI::tbox::Pointer< SAMRAI::math::HierarchySideDataOpsReal< NDIM, double > > | d_hier_sc_data_ops |
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SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyNodeDataOpsReal< NDIM, double > > | d_hier_nc_data_ops |
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SAMRAI::tbox::Pointer< SAMRAI::math::HierarchyEdgeDataOpsReal< NDIM, double > > | d_hier_ec_data_ops |
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SAMRAI::tbox::Pointer< StaggeredStokesPhysicalBoundaryHelper > | d_bc_helper |
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SAMRAI::tbox::Pointer< IBTK::SideDataSynchronization > | d_side_synch_op |
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SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation > | d_rho_bdry_bc_fill_op |
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SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation > | d_mu_bdry_bc_fill_op |
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double | d_rho_scale = 1.0 |
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double | d_mu_scale = 1.0 |
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bool | d_output_rho = false |
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bool | d_output_mu = false |
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int | d_coarsest_reset_ln |
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int | d_finest_reset_ln |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_U_scratch_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_U_rhs_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_U_adv_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_N_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_P_scratch_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_P_rhs_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_sol_vec |
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SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > | d_rhs_vec |
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std::vector< SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > > | d_nul_vecs |
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std::vector< SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > > > | d_U_nul_vecs |
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bool | d_vectors_need_init |
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bool | d_explicitly_remove_nullspace = false |
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std::string | d_stokes_solver_type = StaggeredStokesSolverManager::UNDEFINED |
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std::string | d_stokes_precond_type = StaggeredStokesSolverManager::UNDEFINED |
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SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_stokes_solver_db |
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SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_stokes_precond_db |
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SAMRAI::tbox::Pointer< StaggeredStokesSolver > | d_stokes_solver |
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bool | d_stokes_solver_needs_init |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_U_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_U_old_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_U_cc_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_P_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_F_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_F_cc_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_N_old_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_Omega_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_Div_U_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_Omega_Norm_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_U_regrid_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_U_src_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_indicator_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_F_div_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_Q_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_EE_var |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | d_rho_var |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | d_mu_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_pressure_D_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_pressure_rhs_D_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > | d_velocity_D_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > | d_velocity_rhs_D_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_velocity_D_cc_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_velocity_C_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_velocity_L_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_velocity_rhs_C_var |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_N_full_var |
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std::string | d_N_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_N_refine_type = "CONSERVATIVE_LINEAR_REFINE" |
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std::string | d_mu_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_mu_refine_type = "CONSERVATIVE_LINEAR_REFINE" |
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std::string | d_mu_bdry_extrap_type = "CONSTANT" |
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std::string | d_rho_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_rho_refine_type = "CONSERVATIVE_LINEAR_REFINE" |
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std::string | d_rho_bdry_extrap_type = "CONSTANT" |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::EdgeVariable< NDIM, double > > | d_mu_interp_var |
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std::vector< ResetFluidPropertiesFcnPtr > | d_reset_rho_fcns |
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std::vector< ResetFluidPropertiesFcnPtr > | d_reset_mu_fcns |
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std::vector< void * > | d_reset_rho_fcns_ctx |
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std::vector< void * > | d_reset_mu_fcns_ctx |
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std::vector< SAMRAI::tbox::Pointer< IBAMR::BrinkmanPenalizationStrategy > > | d_brinkman_force |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::SideVariable< NDIM, double > > | d_temp_sc_var |
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int | d_temp_sc_idx |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_temp_cc_var |
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int | d_temp_cc_idx |
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int | d_U_current_idx |
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int | d_U_new_idx |
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int | d_U_scratch_idx |
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int | d_U_old_current_idx |
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int | d_U_old_new_idx |
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int | d_U_old_scratch_idx |
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int | d_P_current_idx |
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int | d_P_new_idx |
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int | d_P_scratch_idx |
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int | d_F_current_idx |
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int | d_F_new_idx |
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int | d_F_scratch_idx |
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int | d_Q_current_idx |
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int | d_Q_new_idx |
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int | d_Q_scratch_idx |
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int | d_N_old_current_idx |
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int | d_N_old_new_idx |
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int | d_N_old_scratch_idx |
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int | d_mu_current_idx |
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int | d_mu_new_idx |
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int | d_mu_scratch_idx |
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int | d_U_cc_idx |
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int | d_F_cc_idx |
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int | d_Omega_idx |
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int | d_Div_U_idx |
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int | d_EE_idx |
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int | d_Omega_Norm_idx |
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int | d_U_regrid_idx |
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int | d_U_src_idx |
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int | d_indicator_idx |
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int | d_F_div_idx |
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int | d_velocity_C_idx |
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int | d_velocity_L_idx |
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int | d_velocity_D_idx |
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int | d_velocity_D_cc_idx |
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int | d_pressure_D_idx |
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int | d_velocity_rhs_C_idx |
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int | d_velocity_rhs_D_idx |
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int | d_pressure_rhs_D_idx |
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int | d_mu_interp_idx |
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int | d_N_full_idx |
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int | d_mu_linear_op_idx |
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int | d_mu_interp_linear_op_idx |
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int | d_rho_linear_op_idx |
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bool | d_rho_is_const = false |
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bool | d_mu_is_const = false |
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IBTK::VCInterpType | d_rho_vc_interp_type |
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IBTK::VCInterpType | d_mu_vc_interp_type |
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SAMRAI::tbox::Array< double > | d_A_scale |
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int | d_precond_reinit_interval = 1 |
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SAMRAI::tbox::Pointer< IBTK::CartGridFunction > | d_rho_init_fcn |
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SAMRAI::tbox::Pointer< IBTK::CartGridFunction > | d_mu_init_fcn |
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SAMRAI::solv::RobinBcCoefStrategy< NDIM > * | d_mu_bc_coef = nullptr |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_mu_adv_diff_var |
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unsigned int | d_mu_adv_diff_idx = 0 |
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bool | d_integrator_is_initialized = false |
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TimeSteppingType | d_viscous_time_stepping_type = TRAPEZOIDAL_RULE |
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TimeSteppingType | d_convective_time_stepping_type = ADAMS_BASHFORTH |
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TimeSteppingType | d_init_convective_time_stepping_type = MIDPOINT_RULE |
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StokesSpecifications | d_problem_coefs |
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std::vector< SAMRAI::tbox::Pointer< AdvDiffHierarchyIntegrator > > | d_adv_diff_hier_integrators |
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SAMRAI::tbox::Pointer< SAMRAI::pdat::FaceVariable< NDIM, double > > | d_U_adv_diff_var |
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double | d_cfl_current = std::numeric_limits<double>::quiet_NaN() |
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double | d_cfl_max = 1.0 |
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bool | d_using_vorticity_tagging = false |
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SAMRAI::tbox::Array< double > | d_Omega_rel_thresh |
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SAMRAI::tbox::Array< double > | d_Omega_abs_thresh |
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double | d_Omega_max = 0.0 |
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bool | d_normalize_pressure = false |
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bool | d_normalize_velocity = false |
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bool | d_creeping_flow = false |
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double | d_regrid_max_div_growth_factor = 1.1 |
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double | d_U_scale = 1.0 |
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double | d_P_scale = 1.0 |
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double | d_F_scale = 1.0 |
|
double | d_Q_scale = 1.0 |
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double | d_Omega_scale = 1.0 |
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double | d_Div_U_scale = 1.0 |
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double | d_EE_scale = 1.0 |
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bool | d_output_U = true |
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bool | d_output_P = true |
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bool | d_output_F = false |
|
bool | d_output_Q = false |
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bool | d_output_Omega = true |
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bool | d_output_Div_U = true |
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bool | d_output_EE = false |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | d_U_var |
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std::string | d_U_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_U_refine_type = "CONSERVATIVE_LINEAR_REFINE" |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | d_P_var |
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std::string | d_P_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_P_refine_type = "LINEAR_REFINE" |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | d_F_var |
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std::string | d_F_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_F_refine_type = "CONSERVATIVE_LINEAR_REFINE" |
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SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > | d_Q_var |
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std::string | d_Q_coarsen_type = "CONSERVATIVE_COARSEN" |
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std::string | d_Q_refine_type = "CONSTANT_REFINE" |
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SAMRAI::tbox::Pointer< IBTK::CartGridFunction > | d_U_init |
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SAMRAI::tbox::Pointer< IBTK::CartGridFunction > | d_P_init |
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SAMRAI::solv::LocationIndexRobinBcCoefs< NDIM > | d_default_bc_coefs |
|
std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > | d_bc_coefs |
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std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > | d_U_bc_coefs |
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std::vector< SAMRAI::solv::RobinBcCoefStrategy< NDIM > * > | d_U_star_bc_coefs |
|
TractionBcType | d_traction_bc_type = TRACTION |
|
SAMRAI::solv::RobinBcCoefStrategy< NDIM > * | d_P_bc_coef |
|
std::unique_ptr< SAMRAI::solv::RobinBcCoefStrategy< NDIM > > | d_Phi_bc_coef |
|
SAMRAI::tbox::Pointer< IBTK::CartGridFunction > | d_F_fcn |
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SAMRAI::tbox::Pointer< IBTK::CartGridFunction > | d_Q_fcn |
|
SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation > | d_U_bdry_bc_fill_op |
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SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation > | d_P_bdry_bc_fill_op |
|
SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation > | d_Q_bdry_bc_fill_op |
|
SAMRAI::tbox::Pointer< IBTK::HierarchyGhostCellInterpolation > | d_no_fill_op |
|
bool | d_use_div_sink_drag_term = false |
|
int | d_coarsest_reset_ln |
|
int | d_finest_reset_ln |
|
std::string | d_convective_op_type = "DEFAULT" |
|
ConvectiveDifferencingType | d_convective_difference_form = ADVECTIVE |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_convective_op_input_db |
|
SAMRAI::tbox::Pointer< ConvectiveOperator > | d_convective_op |
|
bool | d_convective_op_needs_init |
|
std::string | d_velocity_solver_type |
|
std::string | d_velocity_precond_type |
|
std::string | d_velocity_sub_precond_type |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_velocity_solver_db |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_velocity_precond_db |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_velocity_sub_precond_db |
|
SAMRAI::tbox::Pointer< IBTK::PoissonSolver > | d_velocity_solver |
|
bool | d_velocity_solver_needs_init |
|
std::string | d_pressure_solver_type |
|
std::string | d_pressure_precond_type |
|
std::string | d_pressure_sub_precond_type |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_pressure_solver_db |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_pressure_precond_db |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_pressure_sub_precond_db |
|
SAMRAI::tbox::Pointer< IBTK::PoissonSolver > | d_pressure_solver |
|
bool | d_pressure_solver_needs_init |
|
std::string | d_regrid_projection_solver_type |
|
std::string | d_regrid_projection_precond_type |
|
std::string | d_regrid_projection_sub_precond_type |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_regrid_projection_solver_db |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_regrid_projection_precond_db |
|
SAMRAI::tbox::Pointer< SAMRAI::tbox::Database > | d_regrid_projection_sub_precond_db |
|
std::string | d_object_name |
|
bool | d_registered_for_restart = false |
|
SAMRAI::tbox::Pointer< SAMRAI::hier::PatchHierarchy< NDIM > > | d_hierarchy |
|
SAMRAI::tbox::Pointer< SAMRAI::mesh::GriddingAlgorithm< NDIM > > | d_gridding_alg |
|
SAMRAI::tbox::Pointer< SAMRAI::mesh::LoadBalancer< NDIM > > | d_load_balancer |
|
SAMRAI::tbox::Pointer< SAMRAI::pdat::CellVariable< NDIM, double > > | d_workload_var |
|
int | d_workload_idx = IBTK::invalid_index |
|
bool | d_hierarchy_is_initialized = false |
|
bool | d_may_need_to_reset_hierarchy_configuration = false |
|
HierarchyIntegrator * | d_parent_integrator = nullptr |
|
std::set< HierarchyIntegrator * > | d_child_integrators |
|
SAMRAI::tbox::Pointer< SAMRAI::appu::VisItDataWriter< NDIM > > | d_visit_writer |
|
double | d_integrator_time = std::numeric_limits<double>::quiet_NaN() |
|
double | d_start_time = 0.0 |
|
double | d_end_time = std::numeric_limits<double>::max() |
|
double | d_dt_init = std::numeric_limits<double>::max() |
|
double | d_dt_min = 0.0 |
|
double | d_dt_max = std::numeric_limits<double>::max() |
|
double | d_dt_growth_factor = 2.0 |
|
int | d_integrator_step = 0 |
|
int | d_max_integrator_steps = std::numeric_limits<int>::max() |
|
std::deque< double > | d_dt_previous |
|
int | d_num_cycles = 1 |
|
int | d_current_num_cycles = -1 |
|
int | d_current_cycle_num = -1 |
|
double | d_current_dt = std::numeric_limits<double>::quiet_NaN() |
|
int | d_regrid_interval = 1 |
|
RegridMode | d_regrid_mode = STANDARD |
|
bool | d_enable_logging = false |
|
bool | d_enable_logging_solver_iterations = false |
|
std::string | d_bdry_extrap_type = "LINEAR" |
|
SAMRAI::tbox::Array< int > | d_tag_buffer = { 0 } |
|
SAMRAI::tbox::Pointer< HierarchyMathOps > | d_hier_math_ops |
|
bool | d_manage_hier_math_ops = true |
|
std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > > | d_state_variables |
|
std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > > | d_scratch_variables |
|
std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > > | d_copy_scratch_to_current_fast |
|
std::list< SAMRAI::tbox::Pointer< SAMRAI::hier::Variable< NDIM > > > | d_copy_scratch_to_current_slow |
|
SAMRAI::hier::ComponentSelector | d_current_data |
|
SAMRAI::hier::ComponentSelector | d_new_data |
|
SAMRAI::hier::ComponentSelector | d_scratch_data |
|
SAMRAI::hier::ComponentSelector | d_plot_data |
|
std::map< SAMRAI::hier::Variable< NDIM > *, SAMRAI::tbox::Pointer< CartGridFunction > > | d_state_var_init_fcns |
|
SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | d_current_context |
|
SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | d_new_context |
|
SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | d_scratch_context |
|
SAMRAI::tbox::Pointer< SAMRAI::hier::VariableContext > | d_plot_context |
|
SAMRAI::hier::ComponentSelector | d_fill_after_regrid_bc_idxs |
|
SAMRAI::xfer::RefineAlgorithm< NDIM > | d_fill_after_regrid_prolong_alg |
|
std::unique_ptr< SAMRAI::xfer::RefinePatchStrategy< NDIM > > | d_fill_after_regrid_phys_bdry_bc_op |
|
std::vector< PreprocessIntegrateHierarchyCallbackFcnPtr > | d_preprocess_integrate_hierarchy_callbacks |
|
std::vector< void * > | d_preprocess_integrate_hierarchy_callback_ctxs |
|
std::vector< IntegrateHierarchyCallbackFcnPtr > | d_integrate_hierarchy_callbacks |
|
std::vector< void * > | d_integrate_hierarchy_callback_ctxs |
|
std::vector< PostprocessIntegrateHierarchyCallbackFcnPtr > | d_postprocess_integrate_hierarchy_callbacks |
|
std::vector< void * > | d_postprocess_integrate_hierarchy_callback_ctxs |
|
std::vector< ApplyGradientDetectorCallbackFcnPtr > | d_apply_gradient_detector_callbacks |
|
std::vector< void * > | d_apply_gradient_detector_callback_ctxs |
|
std::vector< RegridHierarchyCallbackFcnPtr > | d_regrid_hierarchy_callbacks |
|
std::vector< void * > | d_regrid_hierarchy_callback_ctxs |
|