Class PETScSNESJacobianJOWrapper provides a JacobianOperator interface for a PETSc SNES Jacobian. More...

#include </home/runner/work/IBAMR/IBAMR/ibtk/include/ibtk/PETScSNESJacobianJOWrapper.h>

Inheritance diagram for IBTK::PETScSNESJacobianJOWrapper:

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Public Member Functions
	PETScSNESJacobianJOWrapper (std::string object_name, SNES petsc_snes, PetscErrorCode(petsc_snes_form_jac)(SNES, Vec, Mat, Mat, void ), void *petsc_snes_jac_ctx)
	Constructor. More...

	~PETScSNESJacobianJOWrapper ()
	Destructor.

General Jacobian functionality.
void	formJacobian (SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &x) override
	Compute hierarchy dependent data required for evaluating F'[x]. More...

SAMRAI::tbox::Pointer< SAMRAI::solv::SAMRAIVectorReal< NDIM, double > >	getBaseVector () const override
	Return the vector where the Jacobian is evaluated.

Public Member Functions inherited from IBTK::JacobianOperator
	JacobianOperator (std::string object_name)
	Constructor.

	~JacobianOperator ()=default
	Empty destructor.

Public Member Functions inherited from IBTK::LinearOperator
	LinearOperator (std::string object_name, bool homogeneous_bc=false)
	Constructor.

	~LinearOperator ()
	Empty destructor.

void	modifyRhsForBcs (SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &y) override
	Modify y to account for boundary conditions. More...

Public Member Functions inherited from IBTK::GeneralOperator
	GeneralOperator (std::string object_name, bool homogeneous_bc=false)
	Constructor.

virtual	~GeneralOperator ()
	Empty virtual destructor.

const std::string &	getName () const
	Return the object name.

virtual bool	getIsInitialized () const
	Return whether the operator is initialized.

virtual void	setHomogeneousBc (bool homogeneous_bc)
	Set whether the operator should use homogeneous boundary conditions.

virtual bool	getHomogeneousBc () const
	Return whether the operator is using homogeneous boundary conditions.

virtual void	setSolutionTime (double solution_time)
	Set the time at which the solution is to be evaluated.

virtual double	getSolutionTime () const
	Get the time at which the solution is being evaluated.

virtual void	setTimeInterval (double current_time, double new_time)
	Set the current time interval.

virtual std::pair< double, double >	getTimeInterval () const
	Get the current time interval.

virtual double	getDt () const
	Get the current time step size.

virtual void	setHierarchyMathOps (SAMRAI::tbox::Pointer< HierarchyMathOps > hier_math_ops)
	Set the HierarchyMathOps object used by the operator.

virtual SAMRAI::tbox::Pointer< HierarchyMathOps >	getHierarchyMathOps () const
	Get the HierarchyMathOps object used by the operator.

virtual void	imposeSolBcs (SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &u)
	Impose boudary conditions in the solution vector. More...

virtual void	setLoggingEnabled (bool enable_logging=true)
	Enable or disable logging.

virtual bool	getLoggingEnabled () const
	Determine whether logging is enabled or disabled.

virtual void	printClassData (std::ostream &stream)
	Print class data to stream.

Functions to access the underlying PETSc function.
PetscErrorCode()(SNES, Vec, Mat, Mat, void )	getPETScSNESFormJacobian ()
	Get the function pointer to the PETSc SNES Jacobian "wrapped" by this object.

const SNES &	getPETScSNES () const
	Get the PETSc SNES object "wrapped" by this object.

void *	getPETScSNESJacobianContext () const
	Get the PETSc SNES Jacobian context object "wrapped" by this object.

Linear operator functionality.
void	apply (SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &x, SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &y) override
	Compute y=Ax. More...

void	applyAdd (SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &x, SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &y, SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &z) override
	Compute z=Ax+y. More...

void	initializeOperatorState (const SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &in, const SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &out) override
	Compute hierarchy dependent data required for computing y=Ax and z=Ax+y. More...

void	deallocateOperatorState () override
	Remove all hierarchy dependent data allocated by initializeOperatorState(). More...

Additional Inherited Members
Protected Attributes inherited from IBTK::GeneralOperator
const std::string	d_object_name

bool	d_is_initialized = false

bool	d_homogeneous_bc

double	d_solution_time = std::numeric_limits<double>::quiet_NaN()

double	d_current_time = std::numeric_limits<double>::quiet_NaN()

double	d_new_time = std::numeric_limits<double>::quiet_NaN()

SAMRAI::tbox::Pointer< HierarchyMathOps >	d_hier_math_ops

bool	d_hier_math_ops_external = false

bool	d_enable_logging = false

Detailed Description

Class PETScSNESJacobianJOWrapper provides a JacobianOperator interface for a PETSc SNES Jacobian.

Constructor & Destructor Documentation

◆ PETScSNESJacobianJOWrapper()

IBTK::PETScSNESJacobianJOWrapper::PETScSNESJacobianJOWrapper	(	std::string	object_name,
		SNES	petsc_snes,
		PetscErrorCode()(SNES, Vec, Mat, Mat, void )	petsc_snes_form_jac,
		void *	petsc_snes_jac_ctx
	)

Constructor.

Construct a Jacobian operator wrapper corresponding to the provided PETSc SNES Jacobian object.

Member Function Documentation

◆ apply()

void IBTK::PETScSNESJacobianJOWrapper::apply	(	SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	x,
		SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	y
	)

overridevirtual

Compute y=Ax.

Before calling this function, the form of the vectors x and y should be set properly by the user on all patch interiors on the range of levels covered by the operator. All data in these vectors should be allocated. The user is responsible for managing the storage for the vectors.

Conditions on arguments:

vectors must have same hierarchy
vectors must have same variables (except that x must have enough ghost cells for computation of Ax).

In general, the vectors x and y cannot be the same.

Note: The operator NEED NOT be initialized prior to calling apply.

See also: initializeOperatorState

Parameters

x	input
y	output: y=Ax

Implements IBTK::GeneralOperator.

◆ applyAdd()

void IBTK::PETScSNESJacobianJOWrapper::applyAdd	(	SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	x,
		SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	y,
		SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	z
	)

overridevirtual

Compute z=Ax+y.

Before calling this function, the form of the vectors x, y, and z should be set properly by the user on all patch interiors on the range of levels covered by the operator. All data in these vectors should be allocated. The user is responsible for managing the storage for the vectors.

Conditions on arguments:

vectors must have same hierarchy
vectors must have same variables (except that x must have enough ghost cells for computation of Ax).

In general, the vectors x and z cannot be the same.

Note: The operator NEED NOT be initialized prior to calling apply.

See also: initializeOperatorState

Parameters

x	input
y	input
z	output: z=Ax+y

Reimplemented from IBTK::GeneralOperator.

◆ deallocateOperatorState()

void IBTK::PETScSNESJacobianJOWrapper::deallocateOperatorState ( )

overridevirtual

Remove all hierarchy dependent data allocated by initializeOperatorState().

Remove all hierarchy dependent data set by initializeOperatorState(). It is safe to call deallocateOperatorState() when the operator state is already deallocated.

See also: initializeOperatorState

Reimplemented from IBTK::GeneralOperator.

◆ formJacobian()

void IBTK::PETScSNESJacobianJOWrapper::formJacobian ( SAMRAI::solv::SAMRAIVectorReal< NDIM, double > & x )

overridevirtual

Compute hierarchy dependent data required for evaluating F'[x].

Parameters

x	value where the Jacobian is to be evaluated

Implements IBTK::JacobianOperator.

◆ initializeOperatorState()

void IBTK::PETScSNESJacobianJOWrapper::initializeOperatorState	(	const SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	in,
		const SAMRAI::solv::SAMRAIVectorReal< NDIM, double > &	out
	)

overridevirtual

Compute hierarchy dependent data required for computing y=Ax and z=Ax+y.

The vector arguments for apply(), applyAdd(), etc, need not match those for initializeOperatorState(). However, there must be a certain degree of similarity, including

hierarchy configuration (hierarchy pointer and level range)
number, type and alignment of vector component data
ghost cell widths of data in the input and output vectors

Note: It is generally necessary to reinitialize the operator state when the hierarchy configuration changes.

It is safe to call initializeOperatorState() when the state is already initialized. In this case, the operator state is first deallocated and then reinitialized.

Conditions on arguments:

input and output vectors must have same hierarchy
input and output vectors must have same structure, depth, etc.

Call deallocateOperatorState() to remove any data allocated by this method.

See also: deallocateOperatorState

Parameters

in	input vector
out	output vector

Reimplemented from IBTK::GeneralOperator.

The documentation for this class was generated from the following files:

/home/runner/work/IBAMR/IBAMR/ibtk/include/ibtk/PETScSNESJacobianJOWrapper.h
/home/runner/work/IBAMR/IBAMR/ibtk/src/solvers/wrappers/PETScSNESJacobianJOWrapper.cpp

Public Member Functions

Functions to access the underlying PETSc function.

Linear operator functionality.

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ PETScSNESJacobianJOWrapper()

Member Function Documentation

◆ apply()

◆ applyAdd()

◆ deallocateOperatorState()

◆ formJacobian()

◆ initializeOperatorState()