Here is a list of all documented functions with links to the class documentation for each member:

- a -

• AB2Step() : IBAMR::IBStrategy
• accumulateFromPhysicalBoundaryData() : IBTK::CartCellRobinPhysBdryOp, IBTK::CartSideRobinPhysBdryOp, IBTK::RobinPhysBdryPatchStrategy
• accumulateGhostData() : IBTK::SAMRAIGhostDataAccumulator
• activateLagrangianStructure() : IBAMR::IBMethod, IBAMR::IBStrategy
• activateLagrangianStructures() : IBTK::LDataManager
• addEdge() : IBTK::ParallelEdgeMap
• addFunction() : IBTK::CartGridFunctionSet
• addItem() : IBTK::ParallelMap, IBTK::ParallelSet
• addTemporalAndLinearTermstoRHSOfEnergyEquation() : IBAMR::AllenCahnHierarchyIntegrator, IBAMR::EnthalpyHierarchyIntegrator
• addWorkloadEstimate() : IBAMR::IBHierarchyIntegrator, IBAMR::IBInterpolantMethod, IBAMR::IBLevelSetMethod, IBAMR::IBMethod, IBAMR::IBStrategy, IBAMR::IBStrategySet, IBAMR::IIMethod, IBTK::HierarchyIntegrator, IBTK::LDataManager
• adjustRHSAtCoarseFineBoundary() : IBTK::PoissonUtilities
• adjustRHSAtPhysicalBoundary() : IBTK::PoissonUtilities
• adjustVCSCViscousOpRHSAtCoarseFineBoundary() : IBTK::PoissonUtilities
• adjustVCSCViscousOpRHSAtPhysicalBoundary() : IBTK::PoissonUtilities
• advanceHierarchy() : IBTK::HierarchyIntegrator
• advanceLevel() : IBTK::StandardTagAndInitStrategySet
• AdvDiffCenteredConvectiveOperator() : IBAMR::AdvDiffCenteredConvectiveOperator
• AdvDiffConservativeMassScalarTransportRKIntegrator() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• AdvDiffConvectiveOperatorManager() : IBAMR::AdvDiffConvectiveOperatorManager
• AdvDiffCUIConvectiveOperator() : IBAMR::AdvDiffCUIConvectiveOperator
• AdvDiffHierarchyIntegrator() : IBAMR::AdvDiffHierarchyIntegrator
• AdvDiffPPMConvectiveOperator() : IBAMR::AdvDiffPPMConvectiveOperator
• AdvDiffPredictorCorrectorHierarchyIntegrator() : IBAMR::AdvDiffPredictorCorrectorHierarchyIntegrator
• AdvDiffPredictorCorrectorHyperbolicPatchOps() : IBAMR::AdvDiffPredictorCorrectorHyperbolicPatchOps
• AdvDiffSemiImplicitHierarchyIntegrator() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• AdvDiffStochasticForcing() : IBAMR::AdvDiffStochasticForcing
• AdvDiffWavePropConvectiveOperator() : IBAMR::AdvDiffWavePropConvectiveOperator
• AdvectorExplicitPredictorPatchOps() : IBAMR::AdvectorExplicitPredictorPatchOps
• AdvectorPredictorCorrectorHyperbolicPatchOps() : IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps
• AllenCahnHierarchyIntegrator() : IBAMR::AllenCahnHierarchyIntegrator
• allGather() : IBTK::IBTK_MPI
• allocate() : IBTK::LIndexSetDataFactory< T >, IBTK::LSetDataFactory< T >
• allocate_operator() : IBAMR::AdvDiffCenteredConvectiveOperator, IBAMR::AdvDiffCUIConvectiveOperator, IBAMR::AdvDiffPPMConvectiveOperator, IBAMR::AdvDiffWavePropConvectiveOperator, IBAMR::INSCollocatedCenteredConvectiveOperator, IBAMR::INSCollocatedPPMConvectiveOperator, IBAMR::INSCollocatedWavePropConvectiveOperator, IBAMR::INSStaggeredCenteredConvectiveOperator, IBAMR::INSStaggeredCUIConvectiveOperator, IBAMR::INSStaggeredPPMConvectiveOperator, IBAMR::INSStaggeredStabilizedPPMConvectiveOperator, IBAMR::INSStaggeredUpwindConvectiveOperator, IBAMR::INSStaggeredWavePropConvectiveOperator
• allocate_solver() : IBAMR::StaggeredStokesBlockFactorizationPreconditioner, IBAMR::StaggeredStokesIBLevelRelaxationFACOperator, IBAMR::StaggeredStokesLevelRelaxationFACOperator, IBAMR::StaggeredStokesPETScLevelSolver, IBAMR::StaggeredStokesProjectionPreconditioner, IBAMR::VCStaggeredStokesProjectionPreconditioner, IBTK::CCPoissonBoxRelaxationFACOperator, IBTK::CCPoissonHypreLevelSolver, IBTK::CCPoissonLevelRelaxationFACOperator, IBTK::CCPoissonPETScLevelSolver, IBTK::CCPoissonPointRelaxationFACOperator, IBTK::PETScKrylovLinearSolver, IBTK::PETScNewtonKrylovSolver, IBTK::SCPoissonHypreLevelSolver, IBTK::SCPoissonPETScLevelSolver, IBTK::SCPoissonPointRelaxationFACOperator, IBTK::VCSCViscousOpPointRelaxationFACOperator, IBTK::VCSCViscousPETScLevelSolver
• allocateOperator() : IBAMR::AdvDiffConvectiveOperatorManager, IBAMR::INSCollocatedConvectiveOperatorManager, IBAMR::INSStaggeredConvectiveOperatorManager
• allocatePatchData() : IBTK::HierarchyIntegrator
• allocateScratchData() : IBTK::FACPreconditionerStrategy
• allocateSolver() : IBAMR::StaggeredStokesSolverManager, IBTK::CCPoissonSolverManager, IBTK::KrylovLinearSolverManager, IBTK::NewtonKrylovSolverManager, IBTK::SCPoissonSolverManager
• allToOneSumReduction() : IBTK::IBTK_MPI
• appendNodeDataItem() : IBTK::LNode
• AppInitializer() : IBTK::AppInitializer
• apply() : IBAMR::ConvectiveOperator, IBAMR::VCStaggeredStokesOperator, IBTK::CCLaplaceOperator, IBTK::GeneralOperator, IBTK::PETScMatLOWrapper, IBTK::PETScMFFDJacobianOperator, IBTK::PETScSNESFunctionGOWrapper, IBTK::PETScSNESJacobianJOWrapper, IBTK::SCLaplaceOperator, IBTK::VCSCViscousOperator
• applyAdd() : IBTK::GeneralOperator, IBTK::PETScMatLOWrapper, IBTK::PETScSNESJacobianJOWrapper
• applyConvectiveOperator() : IBAMR::AdvDiffWavePropConvectiveOperator, IBAMR::CellConvectiveOperator, IBAMR::CFUpperConvectiveOperator, IBAMR::ConvectiveOperator, IBAMR::INSCollocatedCenteredConvectiveOperator, IBAMR::INSCollocatedPPMConvectiveOperator, IBAMR::INSCollocatedWavePropConvectiveOperator, IBAMR::INSStaggeredCenteredConvectiveOperator, IBAMR::INSStaggeredCUIConvectiveOperator, IBAMR::INSStaggeredPPMConvectiveOperator, IBAMR::INSStaggeredStabilizedPPMConvectiveOperator, IBAMR::INSStaggeredUpwindConvectiveOperator, IBAMR::INSStaggeredWavePropConvectiveOperator
• applyGradientDetector() : IBAMR::CFINSForcing, IBAMR::IBInterpolantMethod, IBAMR::IBLevelSetMethod, IBAMR::IBMethod, IBAMR::IBStrategy, IBAMR::IBStrategySet, IBAMR::IIMethod, IBTK::HierarchyIntegrator, IBTK::LDataManager, IBTK::StandardTagAndInitStrategySet
• applyGradientDetectorSpecialized() : IBAMR::AdvDiffPredictorCorrectorHierarchyIntegrator, IBAMR::IBHierarchyIntegrator, IBAMR::INSCollocatedHierarchyIntegrator, IBAMR::INSStaggeredHierarchyIntegrator, IBAMR::INSVCStaggeredConservativeHierarchyIntegrator, IBAMR::INSVCStaggeredHierarchyIntegrator, IBAMR::INSVCStaggeredNonConservativeHierarchyIntegrator, IBTK::HierarchyIntegrator
• applyRichardsonExtrapolation() : IBTK::StandardTagAndInitStrategySet
• atRegridPoint() : IBTK::HierarchyIntegrator
• atRegridPointSpecialized() : IBAMR::IBHierarchyIntegrator, IBTK::HierarchyIntegrator
• atRegridTimeStep() : IBTK::HierarchyIntegrator