Here is a list of all documented class members with links to the class documentation for each member:

- s -

• s_kernel_fcn : IBTK::LEInteractor
• SAMRAIDataCache() : IBTK::SAMRAIDataCache
• SAMRAIGhostDataAccumulator() : IBTK::SAMRAIGhostDataAccumulator
• SAMRAIScopedVectorCopy() : IBTK::SAMRAIScopedVectorCopy< TYPE >
• SAMRAIScopedVectorDuplicate() : IBTK::SAMRAIScopedVectorDuplicate< TYPE >
• saveCellData() : IBTK::DebuggingUtilities
• saveFaceData() : IBTK::DebuggingUtilities
• saveLagrangianData() : IBTK::DebuggingUtilities
• saveNodeData() : IBTK::DebuggingUtilities
• saveSideData() : IBTK::DebuggingUtilities
• scatterLagrangianToPETSc() : IBTK::LDataManager
• scatterPETScToLagrangian() : IBTK::LDataManager
• scatterToAll() : IBTK::LDataManager
• scatterToZero() : IBTK::LDataManager
• SCLaplaceOperator() : IBTK::SCLaplaceOperator
• SCPoissonHypreLevelSolver() : IBTK::SCPoissonHypreLevelSolver
• SCPoissonPETScLevelSolver() : IBTK::SCPoissonPETScLevelSolver
• SCPoissonPointRelaxationFACOperator() : IBTK::SCPoissonPointRelaxationFACOperator
• SCPoissonSolverManager() : IBTK::SCPoissonSolverManager
• SecondaryHierarchy() : IBTK::SecondaryHierarchy
• send() : IBTK::IBTK_MPI
• sendBytes() : IBTK::IBTK_MPI
• setAbsoluteTolerance() : IBTK::GeneralSolver, IBTK::PETScPCLSWrapper
• setAdvectionVelocity() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps, IBAMR::ConvectiveOperator
• setAdvectionVelocityFunction() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps
• setAdvectionVelocityIsDivergenceFree() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps
• setApplyMassConstraint() : IBAMR::RelaxationLSMethod
• setApplySignFix() : IBAMR::RelaxationLSMethod
• setApplySubcellFix() : IBAMR::RelaxationLSMethod
• setApplyVolumeRedistribution() : IBAMR::RelaxationLSMethod
• setBcCoefs() : IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSIntermediateVelocityBcCoef, IBAMR::INSProjectionBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::IrregularWaveBcCoef, IBAMR::RelaxationLSBcCoefs, IBAMR::StokesFifthOrderWaveBcCoef, IBAMR::StokesFirstOrderWaveBcCoef, IBAMR::StokesSecondOrderWaveBcCoef, IBTK::muParserRobinBcCoefs
• setBrinkmanCoefficient() : IBAMR::BrinkmanPenalizationStrategy
• setBrinkmanPenaltyFactor() : IBAMR::BrinkmanPenalizationStrategy
• setCellCenteredDensityBoundaryConditions() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setCellCenteredMaterialPropertyBoundaryConditions() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setCellCenteredMaterialPropertyPatchDataIndex() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setCellCenteredTransportQuantityBoundaryConditions() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setCellCenteredTransportQuantityPatchDataIndex() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setCoarsenOperatorName() : IBTK::HierarchyMathOps
• setCoarseSolverAbsoluteTolerance() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::PoissonFACPreconditionerStrategy
• setCoarseSolverMaxIterations() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::PoissonFACPreconditionerStrategy
• setCoarseSolverRelativeTolerance() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::PoissonFACPreconditionerStrategy
• setCoarseSolverType() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::CCPoissonBoxRelaxationFACOperator, IBTK::CCPoissonLevelRelaxationFACOperator, IBTK::CCPoissonPointRelaxationFACOperator, IBTK::PoissonFACPreconditionerStrategy, IBTK::SCPoissonPointRelaxationFACOperator
• setCommunicator() : IBTK::IBTK_MPI
• setComponentOperators() : IBTK::BGaussSeidelPreconditioner
• setComponentPreconditioner() : IBTK::BGaussSeidelPreconditioner, IBTK::BJacobiPreconditioner
• setComponentsHaveNullspace() : IBAMR::KrylovLinearSolverStaggeredStokesSolverInterface, IBAMR::StaggeredStokesFACPreconditioner, IBAMR::StaggeredStokesFACPreconditionerStrategy, IBAMR::StaggeredStokesSolver
• setConsistentInterpolationScheme() : IBTK::CartCellDoubleLinearCFInterpolation, IBTK::CartCellDoubleQuadraticCFInterpolation, IBTK::CartSideDoubleQuadraticCFInterpolation, IBTK::CoarseFineBoundaryRefinePatchStrategy
• setConstraintForce() : IBAMR::CIBMethod, IBAMR::CIBStrategy
• setConvectiveDerivativePatchDataIndex() : IBAMR::STSMassFluxIntegrator
• setConvectiveDifferencingType() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps, IBAMR::ConvectiveOperator, IBAMR::INSHierarchyIntegrator
• setConvectiveOperator() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator, IBAMR::INSHierarchyIntegrator
• setConvectiveOperatorInputDatabase() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• setConvectiveOperatorNeedsInit() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator, IBAMR::INSHierarchyIntegrator
• setConvectiveOperatorsNeedInit() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• setConvectiveOperatorType() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator, IBAMR::INSHierarchyIntegrator
• setConvectiveTimeSteppingType() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator, IBAMR::INSHierarchyIntegrator
• setCreepingFlow() : IBAMR::INSHierarchyIntegrator
• setCurrentIndex() : IBTK::FixedSizedStream
• setCycleNumber() : IBAMR::STSMassFluxIntegrator
• setDampingCoefficient() : IBAMR::AdvDiffHierarchyIntegrator
• setDataOnPatch() : IBAMR::AdvDiffStochasticForcing, IBAMR::CFINSForcing, IBAMR::HeavisideForcingFunction, IBAMR::IBHierarchyIntegrator::IBEulerianForceFunction, IBAMR::IBHierarchyIntegrator::IBEulerianSourceFunction, IBAMR::INSStaggeredStochasticForcing, IBAMR::MarangoniSurfaceTensionForceFunction, IBAMR::PhaseChangeDivUSourceFunction, IBAMR::SpongeLayerForceFunction, IBAMR::StaggeredStokesOpenBoundaryStabilizer, IBAMR::SurfaceTensionForceFunction, IBTK::CartGridFunction, IBTK::CartGridFunctionSet, IBTK::muParserCartGridFunction
• setDataOnPatchHierarchy() : IBAMR::AdvDiffStochasticForcing, IBAMR::CFINSForcing, IBAMR::HeavisideForcingFunction, IBAMR::IBHierarchyIntegrator::IBEulerianForceFunction, IBAMR::INSStaggeredStochasticForcing, IBAMR::MarangoniSurfaceTensionForceFunction, IBAMR::PhaseChangeDivUSourceFunction, IBAMR::SurfaceTensionForceFunction, IBTK::CartGridFunction, IBTK::CartGridFunctionSet
• setDataOnPatchLevel() : IBAMR::CFINSForcing, IBTK::CartGridFunction, IBTK::CartGridFunctionSet
• setDataSet() : IBTK::LSet< T >
• setDefaultConvectiveDifferencingType() : IBAMR::AdvDiffHierarchyIntegrator
• setDefaultConvectiveOperatorInputDatabase() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• setDefaultConvectiveOperatorType() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• setDefaultConvectiveTimeSteppingType() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• setDefaultDiffusionTimeSteppingType() : IBAMR::AdvDiffHierarchyIntegrator
• setDefaultInitialConvectiveTimeSteppingType() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator
• setDensityBoundaryConditions() : IBAMR::STSMassFluxIntegrator
• setDensityPatchData() : IBAMR::VCINSUtilities::SetFluidProperties
• setDensityPatchDataIndex() : IBAMR::STSMassFluxIntegrator
• setDensityVCInterpolationType() : IBAMR::INSVCStaggeredHierarchyIntegrator
• setDiffusionCoefficient() : IBAMR::AdvDiffHierarchyIntegrator
• setDiffusionCoefficientFunction() : IBAMR::AdvDiffHierarchyIntegrator
• setDiffusionCoefficientVariable() : IBAMR::AdvDiffHierarchyIntegrator
• setDiffusionTimeSteppingType() : IBAMR::AdvDiffHierarchyIntegrator
• setDPatchDataInterpolationType() : IBAMR::VCStaggeredStokesOperator, IBTK::VCSCViscousOperator, IBTK::VCSCViscousOpPointRelaxationFACOperator
• setEnthalpyBcCoef() : IBAMR::EnthalpyHierarchyIntegrator
• setExtrapolationType() : IBTK::CartExtrapPhysBdryOp
• setFACPreconditioner() : IBTK::FACPreconditionerStrategy
• setFactorizationType() : IBAMR::StaggeredStokesBlockFactorizationPreconditioner
• SetFluidProperties() : IBAMR::VCINSUtilities::SetFluidProperties
• setFluidVelocityPatchDataIndices() : IBAMR::STSMassFluxIntegrator
• setFromDatabase() : IBTK::LEInteractor
• setGlobalPETScIndex() : IBTK::LNodeIndex
• setHelmholtzRHSOperator() : IBAMR::AdvDiffHierarchyIntegrator
• setHelmholtzRHSOperatorNeedsInit() : IBAMR::AdvDiffHierarchyIntegrator
• setHelmholtzRHSOperatorsNeedInit() : IBAMR::AdvDiffHierarchyIntegrator
• setHelmholtzSolver() : IBAMR::AdvDiffHierarchyIntegrator
• setHelmholtzSolverNeedsInit() : IBAMR::AdvDiffHierarchyIntegrator
• setHelmholtzSolversNeedInit() : IBAMR::AdvDiffHierarchyIntegrator
• setHierarchyMathOps() : IBAMR::STSMassFluxIntegrator, IBTK::GeneralOperator, IBTK::GeneralSolver, IBTK::KrylovLinearSolver, IBTK::NewtonKrylovSolver
• setHomogeneousBc() : IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSIntermediateVelocityBcCoef, IBAMR::INSProjectionBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBTK::ExtendedRobinBcCoefStrategy, IBTK::FACPreconditioner, IBTK::FACPreconditionerStrategy, IBTK::GeneralOperator, IBTK::GeneralSolver, IBTK::HierarchyGhostCellInterpolation, IBTK::KrylovLinearSolver, IBTK::NewtonKrylovSolver, IBTK::RobinPhysBdryPatchStrategy
• setIBForceJacobian() : IBAMR::StaggeredStokesIBLevelRelaxationFACOperator
• setIBInterpOp() : IBAMR::StaggeredStokesIBLevelRelaxationFACOperator
• setIBTimeSteppingType() : IBAMR::StaggeredStokesIBLevelRelaxationFACOperator
• setInitialCenterOfMass() : IBAMR::CIBStrategy
• setInitialConditions() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps
• setInitialConvectiveTimeSteppingType() : IBAMR::AdvDiffSemiImplicitHierarchyIntegrator, IBAMR::INSHierarchyIntegrator
• setInitialGuessNonzero() : IBAMR::StaggeredStokesBlockFactorizationPreconditioner, IBAMR::StaggeredStokesProjectionPreconditioner, IBAMR::VCStaggeredStokesProjectionPreconditioner, IBTK::BGaussSeidelPreconditioner, IBTK::BJacobiPreconditioner, IBTK::FACPreconditioner, IBTK::LinearSolver, IBTK::PETScPCLSWrapper
• setInstrumentNames() : IBAMR::IBInstrumentationSpec
• setInterfaceHalfWidth() : IBAMR::LevelSetUtilities::LevelSetContainer
• setInterpolatedVelocityVector() : IBAMR::CIBMethod, IBAMR::CIBStrategy
• setInterpScale() : IBAMR::CIBMobilitySolver, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver
• setInterpScaleFactor() : IBAMR::CIBStaggeredStokesOperator
• setInterpSpec() : IBAMR::IIMethod
• SetIterator : IBTK::LSetData< T >
• setJacobian() : IBTK::NewtonKrylovSolver, IBTK::PETScNewtonKrylovSolver
• setKinematicsVelocity() : IBAMR::ConstraintIBKinematics
• setKSPType() : IBAMR::CIBSaddlePointSolver, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver, IBTK::PETScKrylovLinearSolver, IBTK::PETScLevelSolver
• setLagrangianIndex() : IBTK::LNodeIndex
• setLambda() : IBAMR::StokesSpecifications
• setLinearizedPosition() : IBAMR::IBImplicitStrategy, IBAMR::IBMethod
• setLiquidFractionPhysicalBcCoef() : IBAMR::AllenCahnHierarchyIntegrator
• setLocalPETScIndex() : IBTK::LNodeIndex
• setLoggingEnabled() : IBTK::GeneralOperator, IBTK::GeneralSolver
• setLSData() : IBAMR::LevelSetUtilities::SetLSProperties
• setLSGhostCellWidth() : IBAMR::RelaxationLSMethod
• setLSPatchDataIndex() : IBAMR::RelaxationLSBcCoefs
• SetLSProperties() : IBAMR::LevelSetUtilities::SetLSProperties
• setMarkers() : IBAMR::IBExplicitHierarchyIntegrator
• setMassDensitySourceTerm() : IBAMR::INSVCStaggeredConservativeMassMomentumRKIntegrator
• setMaterialPropertyPatchDataIndices() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setMaterialPropertyVariable() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setMaxEvaluations() : IBTK::NewtonKrylovSolver
• setMaxIterations() : IBAMR::StaggeredStokesBlockFactorizationPreconditioner, IBAMR::StaggeredStokesProjectionPreconditioner, IBAMR::VCStaggeredStokesProjectionPreconditioner, IBTK::BGaussSeidelPreconditioner, IBTK::BJacobiPreconditioner, IBTK::FACPreconditioner, IBTK::GeneralSolver, IBTK::PETScPCLSWrapper
• setMGCycleType() : IBTK::FACPreconditioner
• setMobilitySolver() : IBAMR::KrylovFreeBodyMobilitySolver
• setMu() : IBAMR::StokesSpecifications
• setNewtonKrylovSolver() : IBTK::PETScMFFDJacobianOperator
• setNodeData() : IBTK::LNode
• setNormalizeSpreadForce() : IBAMR::CIBMobilitySolver, IBAMR::CIBStaggeredStokesOperator, IBAMR::KrylovMobilitySolver
• setNullspace() : IBTK::LinearSolver, IBTK::PETScKrylovLinearSolver, IBTK::PETScLevelSolver
• setNumberOfInterfaceCells() : IBAMR::SurfaceTensionForceFunction
• setNumInterfaceCells() : IBAMR::BrinkmanAdvDiffBcHelper
• setNumPostSmoothingSweeps() : IBTK::FACPreconditioner
• setNumPreSmoothingSweeps() : IBTK::FACPreconditioner
• setNumSources() : IBAMR::IBStandardSourceGen
• setOperator() : IBTK::KrylovLinearSolver, IBTK::NewtonKrylovSolver, IBTK::PETScKrylovLinearSolver, IBTK::PETScMFFDJacobianOperator, IBTK::PETScNewtonKrylovSolver
• setOperatorScaling() : IBTK::VCSCViscousOpPointRelaxationFACOperator
• setOptionsPrefix() : IBAMR::CIBSaddlePointSolver, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver, IBTK::PETScKrylovLinearSolver, IBTK::PETScLevelSolver, IBTK::PETScNewtonKrylovSolver
• setPatchDataIndex() : IBTK::CartCellDoubleLinearCFInterpolation, IBTK::CartCellDoubleQuadraticCFInterpolation, IBTK::CartExtrapPhysBdryOp, IBTK::CartSideDoubleQuadraticCFInterpolation, IBTK::CoarseFineBoundaryRefinePatchStrategy, IBTK::RobinPhysBdryPatchStrategy
• setPatchDataIndices() : IBTK::CartCellDoubleLinearCFInterpolation, IBTK::CartCellDoubleQuadraticCFInterpolation, IBTK::CartExtrapPhysBdryOp, IBTK::CartSideDoubleQuadraticCFInterpolation, IBTK::CoarseFineBoundaryRefinePatchStrategy, IBTK::RobinPhysBdryPatchStrategy
• setPatchHierarchy() : IBTK::CartCellDoubleLinearCFInterpolation, IBTK::CartCellDoubleQuadraticCFInterpolation, IBTK::CartSideDoubleQuadraticCFInterpolation, IBTK::CoarseFineBoundaryRefinePatchStrategy, IBTK::HierarchyMathOps, IBTK::LDataManager, IBTK::LSiloDataWriter, IBTK::SAMRAIDataCache
• setPatchLevels() : IBTK::LDataManager
• setPenaltyCoefficient() : IBAMR::BrinkmanAdvDiffBcHelper
• setPeriodicOffset() : IBTK::LSet< T >
• setPhysicalBcCoef() : IBAMR::AdvDiffHierarchyIntegrator, IBTK::KrylovLinearSolverPoissonSolverInterface, IBTK::LaplaceOperator, IBTK::PoissonFACPreconditioner, IBTK::PoissonFACPreconditionerStrategy, IBTK::PoissonSolver, IBTK::RobinPhysBdryPatchStrategy
• setPhysicalBcCoefs() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps, IBAMR::CIBMobilitySolver, IBAMR::CIBSaddlePointSolver, IBAMR::CIBStaggeredStokesSolver, IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSIntermediateVelocityBcCoef, IBAMR::INSProjectionBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::KrylovLinearSolverStaggeredStokesSolverInterface, IBAMR::KrylovMobilitySolver, IBAMR::StaggeredStokesBlockPreconditioner, IBAMR::StaggeredStokesFACPreconditioner, IBAMR::StaggeredStokesFACPreconditionerStrategy, IBAMR::StaggeredStokesSolver, IBTK::KrylovLinearSolverPoissonSolverInterface, IBTK::LaplaceOperator, IBTK::PoissonFACPreconditioner, IBTK::PoissonFACPreconditionerStrategy, IBTK::PoissonSolver, IBTK::RobinPhysBdryPatchStrategy
• setPhysicalBoundaryConditions() : IBAMR::AdvDiffPhysicalBoundaryUtilities, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps, IBTK::CartCellDoubleLinearCFInterpolation, IBTK::CartCellDoubleQuadraticCFInterpolation, IBTK::CartCellRobinPhysBdryOp, IBTK::CartExtrapPhysBdryOp, IBTK::CartSideDoubleDivPreservingRefine, IBTK::CartSideDoubleQuadraticCFInterpolation, IBTK::CartSideRobinPhysBdryOp, IBTK::CoarseFineBoundaryRefinePatchStrategy, IBTK::RefinePatchStrategySet
• setPhysicalBoundaryHelper() : IBAMR::CIBMobilitySolver, IBAMR::CIBSaddlePointSolver, IBAMR::CIBStaggeredStokesSolver, IBAMR::KrylovLinearSolverStaggeredStokesSolverInterface, IBAMR::KrylovMobilitySolver, IBAMR::StaggeredStokesFACPreconditioner, IBAMR::StaggeredStokesFACPreconditionerStrategy, IBAMR::StaggeredStokesSolver
• setPlotDirectory() : IBAMR::IBInstrumentPanel
• setPoissonSpecifications() : IBTK::KrylovLinearSolverPoissonSolverInterface, IBTK::LaplaceOperator, IBTK::PoissonFACPreconditioner, IBTK::PoissonFACPreconditionerStrategy, IBTK::PoissonSolver
• setPreconditioner() : IBTK::KrylovLinearSolver, IBTK::PETScKrylovLinearSolver
• setPressurePoissonSpecifications() : IBAMR::StaggeredStokesBlockPreconditioner
• setPressureSubdomainSolver() : IBAMR::INSHierarchyIntegrator, IBAMR::StaggeredStokesBlockPreconditioner
• setPressureSubdomainSolverNeedsInit() : IBAMR::INSHierarchyIntegrator
• setPreviousTimeStepSize() : IBAMR::STSMassFluxIntegrator
• setProlongationMethod() : IBTK::PoissonFACPreconditionerStrategy
• setProlongationMethods() : IBAMR::StaggeredStokesFACPreconditionerStrategy
• setRegularizeMobilityFactor() : IBAMR::CIBStaggeredStokesOperator
• setRegularizeMobilityScale() : IBAMR::CIBMobilitySolver, IBAMR::KrylovMobilitySolver
• setReinitializeLSData() : IBAMR::LSInitStrategy
• setRelativeTolerance() : IBTK::GeneralSolver, IBTK::PETScPCLSWrapper
• setResetLevels() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::PoissonFACPreconditionerStrategy
• setResetPriority() : IBAMR::AdvDiffHierarchyIntegrator
• setRestrictionMethod() : IBTK::PoissonFACPreconditionerStrategy
• setRestrictionMethods() : IBAMR::StaggeredStokesFACPreconditionerStrategy
• setReversedOrder() : IBTK::BGaussSeidelPreconditioner
• setRho() : IBAMR::StokesSpecifications
• setRigidBodyVelocity() : IBAMR::CIBMethod, IBAMR::CIBStrategy
• setRotationMatrix() : IBAMR::CIBStrategy
• setShape() : IBAMR::ConstraintIBKinematics
• setSmoother() : IBAMR::SurfaceTensionForceFunction
• setSmootherType() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBAMR::StaggeredStokesLevelRelaxationFACOperator, IBTK::CCPoissonBoxRelaxationFACOperator, IBTK::CCPoissonLevelRelaxationFACOperator, IBTK::CCPoissonPointRelaxationFACOperator, IBTK::PoissonFACPreconditionerStrategy, IBTK::SCPoissonPointRelaxationFACOperator
• setSolutionTime() : IBAMR::CIBMobilitySolver, IBAMR::CIBSaddlePointSolver, IBAMR::CIBStaggeredStokesSolver, IBAMR::DirectMobilitySolver, IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSIntermediateVelocityBcCoef, IBAMR::INSProjectionBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver, IBAMR::STSMassFluxIntegrator, IBTK::FACPreconditioner, IBTK::FACPreconditionerStrategy, IBTK::GeneralOperator, IBTK::GeneralSolver, IBTK::KrylovLinearSolver, IBTK::NewtonKrylovSolver
• setSolutionTolerance() : IBTK::NewtonKrylovSolver
• setSolveRigidBodyVelocity() : IBAMR::CIBStrategy, IBAMR::IBFEDirectForcingKinematics
• setSourceNames() : IBAMR::IBStandardSourceGen
• setSourcePressures() : IBAMR::IBLagrangianSourceStrategy, IBAMR::IBStandardSourceGen
• setSourceRadii() : IBAMR::IBStandardSourceGen
• setSourceTerm() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps
• setSourceTermFunction() : IBAMR::AdvDiffHierarchyIntegrator, IBAMR::AdvectorPredictorCorrectorHyperbolicPatchOps
• setSpreadScale() : IBAMR::CIBMobilitySolver, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver
• setSpreadScaleFactor() : IBAMR::CIBStaggeredStokesOperator
• setSpreadSpec() : IBAMR::IIMethod
• setStokesSolver() : IBAMR::INSStaggeredHierarchyIntegrator, IBAMR::INSVCStaggeredHierarchyIntegrator
• setStokesSolverNeedsInit() : IBAMR::INSStaggeredHierarchyIntegrator, IBAMR::INSVCStaggeredHierarchyIntegrator
• setStokesSpecifications() : IBAMR::DirectMobilitySolver, IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSHierarchyIntegrator, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::StokesBcCoefStrategy
• setStreamableClassID() : IBTK::StreamableFactory
• setStructureNamesOnLevel() : IBAMR::IBRedundantInitializer
• setSurfaceContourLevel() : IBAMR::IBHydrodynamicSurfaceForceEvaluator
• setSurfaceTensionCoef() : IBAMR::SurfaceTensionForceFunction
• setSymmetricPreconditioner() : IBTK::BGaussSeidelPreconditioner
• setTargetPatchDataIndex() : IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSIntermediateVelocityBcCoef, IBAMR::INSProjectionBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBTK::ExtendedRobinBcCoefStrategy
• setTargetPatchLevelNumber() : IBTK::CellNoCornersFillPattern, IBTK::SideNoCornersFillPattern
• setTargetPressurePatchDataIndex() : IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::StokesBcCoefStrategy
• setTargetVelocityPatchDataIndex() : IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::StokesBcCoefStrategy
• setTimeInterval() : IBAMR::BrinkmanAdvDiffBcHelper, IBAMR::BrinkmanPenalizationStrategy, IBAMR::CIBMobilitySolver, IBAMR::CIBSaddlePointSolver, IBAMR::CIBStaggeredStokesSolver, IBAMR::DirectMobilitySolver, IBAMR::IBLagrangianForceStrategy, IBAMR::IBLagrangianForceStrategySet, IBAMR::IBLagrangianSourceStrategy, IBAMR::INSCollocatedVelocityBcCoef, IBAMR::INSIntermediateVelocityBcCoef, IBAMR::INSProjectionBcCoef, IBAMR::INSStaggeredPressureBcCoef, IBAMR::INSStaggeredVelocityBcCoef, IBAMR::INSVCStaggeredPressureBcCoef, IBAMR::INSVCStaggeredVelocityBcCoef, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver, IBAMR::STSMassFluxIntegrator, IBTK::FACPreconditioner, IBTK::FACPreconditionerStrategy, IBTK::GeneralOperator, IBTK::GeneralSolver, IBTK::KrylovLinearSolver, IBTK::NewtonKrylovSolver
• setTorqueOrigin() : IBAMR::IBHydrodynamicForceEvaluator
• setToZero() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::FACPreconditionerStrategy, IBTK::PoissonFACPreconditionerStrategy
• setTractionBcType() : IBAMR::StokesBcCoefStrategy
• setTransportQuantityPatchDataIndices() : IBAMR::AdvDiffConservativeMassScalarTransportRKIntegrator
• setTransportQuantityTimeIndependent() : IBAMR::BrinkmanAdvDiffSemiImplicitHierarchyIntegrator
• setUniformBodyForce() : IBAMR::IBKirchhoffRodForceGen, IBAMR::IBStandardForceGen
• setupBcCoefBoxes() : IBTK::StaggeredPhysicalBoundaryHelper
• setupBcCoefObjects() : IBAMR::StaggeredStokesPhysicalBoundaryHelper
• setUpdatedPosition() : IBAMR::IBImplicitStrategy, IBAMR::IBMethod
• setupKSPVecs() : IBAMR::StaggeredStokesPETScLevelSolver, IBTK::CCPoissonPETScLevelSolver, IBTK::PETScLevelSolver, IBTK::SCPoissonPETScLevelSolver, IBTK::VCSCViscousPETScLevelSolver
• setupMaskingFunction() : IBTK::StaggeredPhysicalBoundaryHelper
• setupNullspace() : IBTK::PETScLevelSolver
• setupPlotData() : IBTK::HierarchyIntegrator
• setupPlotDataSpecialized() : IBAMR::INSCollocatedHierarchyIntegrator, IBAMR::INSStaggeredHierarchyIntegrator, IBAMR::INSVCStaggeredConservativeHierarchyIntegrator, IBAMR::INSVCStaggeredHierarchyIntegrator, IBAMR::INSVCStaggeredNonConservativeHierarchyIntegrator, IBTK::HierarchyIntegrator
• setupSolverVecs() : IBAMR::IBImplicitStrategy, IBAMR::IBMethod
• setupSolverVectors() : IBAMR::INSStaggeredHierarchyIntegrator
• setupTagBuffer() : IBAMR::IBInterpolantMethod, IBAMR::IBLevelSetMethod, IBAMR::IBMethod, IBAMR::IBStrategy, IBAMR::IBStrategySet, IBAMR::IIMethod, IBTK::HierarchyIntegrator
• setUseFixedLEOperators() : IBAMR::IBStrategy
• setUseMultistepTimeStepping() : IBAMR::IBStrategy
• setVelocities() : IBTK::MarkerPatchHierarchy
• setVelocityCellCenteredDCoefficient() : IBAMR::VCStaggeredStokesProjectionPreconditioner
• setVelocityPoissonSpecifications() : IBAMR::CIBMobilitySolver, IBAMR::CIBSaddlePointSolver, IBAMR::CIBStaggeredStokesSolver, IBAMR::KrylovLinearSolverStaggeredStokesSolverInterface, IBAMR::KrylovMobilitySolver, IBAMR::StaggeredStokesBlockPreconditioner, IBAMR::StaggeredStokesFACPreconditioner, IBAMR::StaggeredStokesFACPreconditionerStrategy, IBAMR::StaggeredStokesSolver
• setVelocitySubdomainSolver() : IBAMR::INSHierarchyIntegrator, IBAMR::StaggeredStokesBlockPreconditioner
• setVelocitySubdomainSolverNeedsInit() : IBAMR::INSHierarchyIntegrator
• setViscosityInterpolationType() : IBAMR::INSVCStaggeredPressureBcCoef, IBTK::VCSCViscousPETScLevelSolver
• setViscosityPatchData() : IBAMR::VCINSUtilities::SetFluidProperties
• setViscosityVCInterpolationType() : IBAMR::INSVCStaggeredHierarchyIntegrator
• setViscousTimeSteppingType() : IBAMR::INSHierarchyIntegrator
• SideDataSynchronization() : IBTK::SideDataSynchronization
• SideNoCornersFillPattern() : IBTK::SideNoCornersFillPattern
• SideSynchCopyFillPattern() : IBTK::SideSynchCopyFillPattern
• size() : IBTK::LSet< T >, IBTK::MarkerPatch
• size_type : IBTK::LSet< T >
• skipCycle() : IBTK::HierarchyIntegrator
• smoothError() : IBAMR::StaggeredStokesBoxRelaxationFACOperator, IBAMR::StaggeredStokesIBLevelRelaxationFACOperator, IBAMR::StaggeredStokesLevelRelaxationFACOperator, IBTK::CCPoissonBoxRelaxationFACOperator, IBTK::CCPoissonLevelRelaxationFACOperator, IBTK::CCPoissonPointRelaxationFACOperator, IBTK::FACPreconditionerStrategy, IBTK::SCPoissonPointRelaxationFACOperator, IBTK::VCSCViscousOpPointRelaxationFACOperator
• SnapshotCache() : IBTK::SnapshotCache
• solveBodyMobilitySystem() : IBAMR::CIBMobilitySolver
• solveBodySystem() : IBAMR::DirectMobilitySolver
• solveCoarsestLevel() : IBAMR::StaggeredStokesFACPreconditionerStrategy, IBTK::CCPoissonBoxRelaxationFACOperator, IBTK::CCPoissonLevelRelaxationFACOperator, IBTK::CCPoissonPointRelaxationFACOperator, IBTK::FACPreconditionerStrategy, IBTK::SCPoissonPointRelaxationFACOperator
• solveMobilitySystem() : IBAMR::CIBMobilitySolver
• SolverMaker : IBAMR::StaggeredStokesSolverManager, IBTK::CCPoissonSolverManager, IBTK::KrylovLinearSolverManager, IBTK::NewtonKrylovSolverManager, IBTK::SCPoissonSolverManager
• solveSystem() : IBAMR::CIBSaddlePointSolver, IBAMR::CIBStaggeredStokesSolver, IBAMR::DirectMobilitySolver, IBAMR::KrylovFreeBodyMobilitySolver, IBAMR::KrylovMobilitySolver, IBAMR::StaggeredStokesBlockFactorizationPreconditioner, IBAMR::StaggeredStokesProjectionPreconditioner, IBAMR::VCStaggeredStokesProjectionPreconditioner, IBTK::BGaussSeidelPreconditioner, IBTK::BJacobiPreconditioner, IBTK::CCPoissonHypreLevelSolver, IBTK::FACPreconditioner, IBTK::GeneralSolver, IBTK::PETScKrylovLinearSolver, IBTK::PETScLevelSolver, IBTK::PETScNewtonKrylovSolver, IBTK::PETScPCLSWrapper, IBTK::SCPoissonHypreLevelSolver
• SpongeLayerForceFunction() : IBAMR::SpongeLayerForceFunction
• spread() : IBTK::LDataManager, IBTK::LEInteractor
• spreadFluidSource() : IBAMR::IBLevelSetMethod, IBAMR::IBMethod, IBAMR::IBStrategy, IBAMR::IBStrategySet
• spreadForce() : IBAMR::CIBMethod, IBAMR::GeneralizedIBMethod, IBAMR::IBInterpolantMethod, IBAMR::IBLevelSetMethod, IBAMR::IBMethod, IBAMR::IBStrategy, IBAMR::IBStrategySet, IBAMR::IIMethod
• spreadLinearizedForce() : IBAMR::IBImplicitStrategy, IBAMR::IBMethod
• spreadQ() : IBAMR::IBInterpolantMethod
• SSPRK3Step() : IBAMR::FEMechanicsExplicitIntegrator
• StaggeredPhysicalBoundaryHelper() : IBTK::StaggeredPhysicalBoundaryHelper
• StaggeredStokesBlockFactorizationPreconditioner() : IBAMR::StaggeredStokesBlockFactorizationPreconditioner
• StaggeredStokesBlockPreconditioner() : IBAMR::StaggeredStokesBlockPreconditioner
• StaggeredStokesBoxRelaxationFACOperator() : IBAMR::StaggeredStokesBoxRelaxationFACOperator
• StaggeredStokesFACPreconditioner() : IBAMR::StaggeredStokesFACPreconditioner
• StaggeredStokesFACPreconditionerStrategy() : IBAMR::StaggeredStokesFACPreconditionerStrategy
• StaggeredStokesIBLevelRelaxationFACOperator() : IBAMR::StaggeredStokesIBLevelRelaxationFACOperator
• StaggeredStokesLevelRelaxationFACOperator() : IBAMR::StaggeredStokesLevelRelaxationFACOperator
• StaggeredStokesOpenBoundaryStabilizer() : IBAMR::StaggeredStokesOpenBoundaryStabilizer
• StaggeredStokesPETScLevelSolver() : IBAMR::StaggeredStokesPETScLevelSolver
• StaggeredStokesPhysicalBoundaryHelper() : IBAMR::StaggeredStokesPhysicalBoundaryHelper
• StaggeredStokesProjectionPreconditioner() : IBAMR::StaggeredStokesProjectionPreconditioner
• StaggeredStokesSolver() : IBAMR::StaggeredStokesSolver
• StaggeredStokesSolverManager() : IBAMR::StaggeredStokesSolverManager
• StandardTagAndInitStrategySet() : IBTK::StandardTagAndInitStrategySet
• stepsRemaining() : IBTK::HierarchyIntegrator
• StokesBcCoefStrategy() : IBAMR::StokesBcCoefStrategy
• StokesFifthOrderWaveBcCoef() : IBAMR::StokesFifthOrderWaveBcCoef
• StokesFirstOrderWaveBcCoef() : IBAMR::StokesFirstOrderWaveBcCoef
• StokesSecondOrderWaveBcCoef() : IBAMR::StokesSecondOrderWaveBcCoef
• StokesSpecifications() : IBAMR::StokesSpecifications
• StokesWaveGeneratorStrategy() : IBAMR::StokesWaveGeneratorStrategy
• storeSnapshot() : IBTK::SnapshotCache
• strain_rate() : IBTK::HierarchyMathOps, IBTK::PatchMathOps
• Streamable() : IBTK::Streamable
• STREAMABLE_CLASS_ID : IBAMR::IBAnchorPointSpec, IBAMR::IBBeamForceSpec, IBAMR::IBInstrumentationSpec, IBAMR::IBRodForceSpec, IBAMR::IBSourceSpec, IBAMR::IBSpringForceSpec, IBAMR::IBTargetPointForceSpec
• StreamableFactory() : IBTK::StreamableFactory
• StreamableManager() : IBTK::StreamableManager
• StructureParameters() : IBAMR::ConstraintIBKinematics::StructureParameters
• STSMassFluxIntegrator() : IBAMR::STSMassFluxIntegrator
• subtractMeanConstraintForce() : IBAMR::CIBMethod, IBAMR::CIBStrategy
• sumReduction() : IBTK::IBTK_MPI
• SurfaceTensionForceFunction() : IBAMR::SurfaceTensionForceFunction
• SYNCH_CURRENT_DATA_ALG : IBTK::HierarchyIntegrator
• SynchronizationTransactionComponent() : IBTK::EdgeDataSynchronization::SynchronizationTransactionComponent, IBTK::FaceDataSynchronization::SynchronizationTransactionComponent, IBTK::NodeDataSynchronization::SynchronizationTransactionComponent, IBTK::SideDataSynchronization::SynchronizationTransactionComponent
• synchronizeData() : IBTK::EdgeDataSynchronization, IBTK::FaceDataSynchronization, IBTK::NodeDataSynchronization, IBTK::SideDataSynchronization
• synchronizeHierarchyData() : IBTK::HierarchyIntegrator
• synchronizeHierarchyDataSpecialized() : IBTK::HierarchyIntegrator